Vibrio cholerae O1 O395: VC0395_A0492
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Entry
VC0395_A0492 CDS
T00520
Symbol
ligA-1
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vco
Vibrio cholerae O1 O395
Pathway
vco03030
DNA replication
vco03410
Base excision repair
vco03420
Nucleotide excision repair
vco03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VC0395_A0492 (ligA-1)
03410 Base excision repair
VC0395_A0492 (ligA-1)
03420 Nucleotide excision repair
VC0395_A0492 (ligA-1)
03430 Mismatch repair
VC0395_A0492 (ligA-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vco03032
]
VC0395_A0492 (ligA-1)
03400 DNA repair and recombination proteins [BR:
vco03400
]
VC0395_A0492 (ligA-1)
Enzymes [BR:
vco01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VC0395_A0492 (ligA-1)
DNA replication proteins [BR:
vco03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VC0395_A0492 (ligA-1)
DNA repair and recombination proteins [BR:
vco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VC0395_A0492 (ligA-1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VC0395_A0492 (ligA-1)
MMR (mismatch excision repair)
DNA ligase
VC0395_A0492 (ligA-1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VC0395_A0492 (ligA-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
ABQ22115
UniProt:
A5F2W3
LinkDB
All DBs
Position
2:525975..527984
Genome browser
AA seq
669 aa
AA seq
DB search
MSDVAQRLTELRKTLHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELMSSDSPSL
RVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIQAVQHSAFCCEPKLDGLA
VSLLYENGVLTRAATRGDGMTGENITENVRTIKAIPLRLQGADFPTRLEVRGEVFMPKAG
FEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELATSHY
QRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQFLAYEIDGVVIKVDDIQLQERL
GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN
ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERVEG
EAVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRAG
ELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGDATALNLAQHFLSLEAIQQ
ASLEQFIEVPDVGVVVASHLLAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGK
IVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFD
EQALIEFLK
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatgtcgcgcaacgattaacagaattaagaaaaaccttgcatgagcatggtgtc
cgctattacgtagaagatgcccccaccattccggatgcagaatacgatcgcttaatgcgc
gagctgctggaattggaagcggctcacccggaattgatgagctcggactcgcccagttta
cgagtcggaggacgtccgctggatgcttttgaatctgtcgtgcatgaaattccgatgtta
tcgctcgataacgcctttgatgatggtgaattagaaagcttttatcgccgtatgacggat
cggatccaggcggtacagcatagtgccttttgttgtgagccgaaactggatggcttggcg
gtcagtttactatacgaaaatggtgttctgacccgcgcggcgactcgtggtgatggtatg
accggcgaaaacatcacggaaaatgtacgtaccattaaagcaatccctttacgtctgcaa
ggcgcagattttccaactcgccttgaagtgcgcggtgaagtgtttatgcctaaagcgggg
tttgaagcacttaacgcacgagcattgaaaaaaggtgaaaagcagtttgttaaccctcgt
aatgcggcggcgggaagcctacgtcaactcgactccaaaattaccgcccaacgtccactg
gctttttacgcttatagtgttggtgttattgaaggcggagagttagcgaccagccactat
caacgatttttgcaactaaagggctgggggctgccgatttgtcctgaaaccaaactggta
acttctctcgccgaagtcaaagctttttatcaagacattttgcaacgtcgtcagtttttg
gcttatgagattgatggcgtcgtcattaaagttgacgatatccagttgcaggagcgattg
gggttcgttgctagagcgccgcgctgggcgattgcctataaatttcctgcgcaggaagag
cttactttgctcaatgatgttgaatttcaggtaggtcgtactggcgcgattaccccagtt
gctaagttggagcctgtttttgtcggtggtgttacggtaagtaatgccacattacataat
gccgatgagattgagcgtttgggagtgatggtcggagatacggtggtgatccgccgtgct
ggggatgtcatcccacaaatcgtctctgtggtattagagcgacgccctgagaatgcaaaa
tctattgtatttcctactcgttgcccagtttgtcaatcggatgttgaacgggttgaagga
gaagcggttgctcgatgttccggtggactgatttgccaagctcagcgcaaagaggcattg
aagcattttgtttctcgcaaggccatggatgtagaaggcttgggcgataaagtgattgag
caactggttgaccgagaaatggtgagtacacctgctgatttattccggttaagagcggga
gagctcacgattttggagcgaatgggccccaaatcggcgcagaatgtgattgatgctctc
aataaagcgaagcaaaccacattacctaagtttttatatgcactgggtattcgtgaagtc
ggcgatgctaccgcactcaacttggctcagcactttttaagtttggaagcgattcaacaa
gcgagtttagaacaatttatcgaagttcccgatgtcggagtggttgttgcaagccattta
ctggccttctttgcgcaagaccgtaaccaacaagtgatcaatgaattgctagaacaaggc
atcacatggccggcgctaacggctgcgcccgtggcggtagactctgctctagcgggcaaa
attgttgtgttaaccggcagttttactcaattgtctcgtaatgatgcgaaagccgcacta
caagctttaggtgctaaggtgacgggtagcgtatcaaaaaatactgatattgtttttgca
ggagaagcagcgggctctaagctagccaaagcgaccgagttgggtatccaagttttcgat
gagcaagcattaatcgaatttttgaaataa
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