Vescimonas coprocola: MM50RIKEN_14350
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Entry
MM50RIKEN_14350 CDS
T07634
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vcop
Vescimonas coprocola
Pathway
vcop03030
DNA replication
vcop03410
Base excision repair
vcop03420
Nucleotide excision repair
vcop03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vcop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MM50RIKEN_14350 (ligA)
03410 Base excision repair
MM50RIKEN_14350 (ligA)
03420 Nucleotide excision repair
MM50RIKEN_14350 (ligA)
03430 Mismatch repair
MM50RIKEN_14350 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vcop03032
]
MM50RIKEN_14350 (ligA)
03400 DNA repair and recombination proteins [BR:
vcop03400
]
MM50RIKEN_14350 (ligA)
Enzymes [BR:
vcop01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MM50RIKEN_14350 (ligA)
DNA replication proteins [BR:
vcop03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MM50RIKEN_14350 (ligA)
DNA repair and recombination proteins [BR:
vcop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MM50RIKEN_14350 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MM50RIKEN_14350 (ligA)
MMR (mismatch excision repair)
DNA ligase
MM50RIKEN_14350 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MM50RIKEN_14350 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
PTCB-BRCT
HHH_2
HHH_5
Motif
Other DBs
NCBI-ProteinID:
BCK81672
UniProt:
A0A810Q5Y2
LinkDB
All DBs
Position
1478094..1480109
Genome browser
AA seq
671 aa
AA seq
DB search
MKERLIRQRELTARLNTYRDEYYNQNAPSVSDAVYDRLFDELTELEEETGVVMSNSPTQT
VGYPVVSRLPQAKHDIPLLSLDKTKLISELLAFQDGRTVDFSLKLDGLTTEIIYEGGLLQ
RLSTRGDGDIGEDITHNAEAIEGIPVQIPYKERLVVAGESFIHCNDFERLRQKLVDSTGK
PYRNSRNLAAGSVRAYNSAVCAKRCVHFLPFAVIEGLPEIEAETDSKRMKLAKLTEFGFG
RVRSIQFATANNDMMDLHIKVLRDKAAEEDLPIDGLVMTYDSISYSRTCGRTGHHFKDGL
AFKFEDELFETRLDHIEWTPTRSGEISPVAVFDTAEIDGCEVSRATLHNLSFIEGLELMP
GNRILVSKRNMIIPQVEENLDRGDFSMEVLVPSLCPCCGYQTMIHTTQKRTDGEQKLTKT
LFCHNPNCASQNLRKFVHFVGKKAMDIDGLSEATLEQFIARGWLQDFTDIYRLDNHRDEI
IRMDGFGERSWQRLWDAIQKSRNTTFERYLIAMDIPMIGNTASAALGRCFDQSLRAFEVA
VDSGYDFTQLPDFGETLHNNIHEWFSVEENRILWEELKPMVNIEKKETAMSVVQDNPFVG
KTLVVTGKVEPYTRDGINAKIYSLGAKAGSSVSKNTDYLICGENAGSKLAKAQALGVAVL
SPAEFFRMIGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaagattgatacggcagcgtgaactgaccgcccggctcaatacatatcgggac
gagtattacaaccaaaatgctccgtcagtatcggacgctgtatatgaccggctctttgat
gagctgactgaactggaggaagaaaccggcgtggtgatgtccaattcaccgacgcagacc
gtgggctaccccgttgtgtcgaggctgccgcaggcaaagcacgatattccgctgttatcg
ctggataagacaaagctgataagcgagctgcttgcatttcaggacggccgcacagtggat
ttctcactgaagctggacggactgacgaccgagatcatttatgagggcggccttctgcaa
cggctctctacccggggcgacggcgacatcggtgaggatattacccacaacgccgaagcc
atcgaaggaataccggtgcagatcccgtacaaggaaagactggtcgttgccggtgagagt
tttattcactgtaacgactttgaacggctgcgccaaaagctggttgacagtacgggaaag
ccgtaccgaaacagccgcaatcttgccgctggctccgtccgtgcttacaattctgcggta
tgcgccaagcggtgcgtccactttttgccctttgcggtcatagagggactgccggagatc
gaggccgagacggacagcaaacgcatgaagctggcaaagctcactgaattcggcttcggc
agagtgcgctctattcagtttgcaacggcaaataacgatatgatggatctgcacattaag
gtactgcgggacaaagcggccgaggaagatctgccgatcgacggactggtcatgacctat
gactccatttcctactcccgcacctgcggacggacagggcaccatttcaaggatggtctt
gcctttaagtttgaagacgagctctttgaaacaaggctcgaccacattgagtggacgccg
acccgttccggtgagatctctccggtagctgtttttgacacggcagagatcgacggatgc
gaggtgtcccgtgcaacgctgcacaacctctcttttattgaggggcttgagttgatgccg
ggcaaccgcattctggtgagtaagcggaacatgatcatccctcaggtcgaagaaaacctt
gaccgtggagatttttcaatggaagtgctggttccgtctctctgcccctgctgtgggtat
cagacgatgatccatactacacagaagcggaccgacggtgagcagaagctgacgaaaaca
ctattctgccacaatccgaattgtgcatcgcagaatctgaggaaattcgttcacttcgtc
ggaaagaaagcgatggacattgatgggctgtcagaggcgacgctggagcaattcattgcc
cgtggctggcttcaggattttacggatatttaccggctggataatcaccgggacgagatc
atccgtatggacggtttcggagaaaggtcctggcagcggttgtgggatgcgattcaaaaa
agccgcaataccacatttgaacgctatcttatcgcaatggatattccgatgatcggcaac
acagccagcgctgcgctcggtcgatgcttcgatcagagtctccgtgcctttgaggtagcg
gtcgattccggctatgattttacgcagcttcccgatttcggagaaacgctgcataacaac
attcacgaatggttttcagttgaagaaaaccgcattttatgggaggaattaaagcctatg
gtaaacattgaaaagaaagaaaccgctatgtccgtcgtacaggacaacccctttgtgggg
aaaacgcttgtggttacgggcaaggtcgagccgtacacccgtgacggcatcaatgcgaag
atatattctttgggtgcgaaagccggaagctccgtatccaagaataccgactacctgatc
tgcggcgaaaatgccggcagtaagctcgccaaggcgcaagcgctcggcgttgccgtactg
tctccggcagagtttttccgtatgatcggagagtaa
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