Vagococcus carniphilus: H9L18_08900
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Entry
H9L18_08900 CDS
T06797
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vcp
Vagococcus carniphilus
Pathway
vcp03030
DNA replication
vcp03410
Base excision repair
vcp03420
Nucleotide excision repair
vcp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H9L18_08900 (ligA)
03410 Base excision repair
H9L18_08900 (ligA)
03420 Nucleotide excision repair
H9L18_08900 (ligA)
03430 Mismatch repair
H9L18_08900 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vcp03032
]
H9L18_08900 (ligA)
03400 DNA repair and recombination proteins [BR:
vcp03400
]
H9L18_08900 (ligA)
Enzymes [BR:
vcp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H9L18_08900 (ligA)
DNA replication proteins [BR:
vcp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H9L18_08900 (ligA)
DNA repair and recombination proteins [BR:
vcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H9L18_08900 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H9L18_08900 (ligA)
MMR (mismatch excision repair)
DNA ligase
H9L18_08900 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H9L18_08900 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
MutS_V
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QNN72009
LinkDB
All DBs
Position
complement(1817899..1819920)
Genome browser
AA seq
673 aa
AA seq
DB search
MDKNQAKIEIAALNETLTQWAHSYYVKDMPSVEDSEYDKVYHQLVELESAFPELVTSDSI
TQRIGGEILKGFNKVEHAIPMMSLNNAFNKGDLLEFDKRIKKLTSIPIEYMVELKIDGLA
INLRYEDGLFVQGATRGDGTIGEDITKNLKTVQSIPLKLSEPLTIDVRGECYMPKKSFIQ
LNESREASGENIFANPRNAAAGSLRQLDSKITAKRNLSTFIYTIADTDNFAANTQSDSLN
VLDELGLKTNTERKLCDSIEEVWEYIETFLDKRTELDYEIDGIVIKVNDFSAQQEIGFTV
KAPRWAIAYKFPAEEAETIIRDIEWTVGRTGVVTPTAVMDPVRLAGTTVSRASLHNVDLI
EEKDIRLLDSVMIHKAGDIIPEVTRVLVDKRGADSVPYVFPTHCPTCGSELERIESEVAL
RCMNPMCPALIKEGLNHFVSRNAMNIDGLGPRVLEQMYDKGIIKNVADLYFVTEEELLTL
DKIKEKSANNILTAIQNSKDNSLEKLLFGLGIHHVGAKAAKLIAEKFKELDHIITAEKEE
ISSIDTIGPVIADSIEKYFANDEVHELIAELKRANLNLTYLGKTSEDLSAIDSPFKDKTV
VLTGKLTHFNRNEAKERIEALGGKVTGSVSKKTDIVVAGEEAGSKLEKALKLEVAVWNEE
QMVSAIENSTKVE
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
ttggataaaaatcaagcaaagatagaaatagcagctttgaatgaaacgttgactcagtgg
gcacatagttattatgtaaaagatatgccaagtgtagaagattcagaatatgataaagtg
taccatcaattagttgagttagaatcagcttttccagagttagtaacgtctgattctatt
acacaacgaattggtggagaaatcttaaaaggatttaataaagttgaacatgctattcca
atgatgagtttaaataacgcttttaataaaggcgatttgttagagtttgataaacgaatt
aaaaaattaacaagtattccaattgaatacatggttgaattaaaaattgacggattagcc
attaatttgcgatatgaagatgggttatttgttcagggagcaactagaggagatgggaca
attggcgaggatattactaaaaatttaaaaactgttcaatcaattccattgaaattatca
gaacctttaacaatagatgttcgtggtgaatgttacatgcctaaaaaatcattcattcaa
ctaaatgaatctcgtgaagcaagtggtgaaaatatttttgctaacccaagaaatgcagcc
gcaggaagcttacgccagttagactcaaaaattacggcaaagagaaacttaagtacgttt
atttatacaattgctgacacggataattttgctgctaacacgcaaagcgattctcttaat
gtattagatgaattaggacttaaaactaacactgaacgcaaattatgcgattctattgaa
gaagtttgggaatacattgaaacattcctagataaaagaactgagttagattatgaaatt
gatggtattgtgattaaagtaaacgacttttcagcacaacaagagattggtttcactgta
aaagctcctagatgggcaattgcttataagtttccggcagaagaagctgaaacgattatt
cgagatattgaatggacagttggtagaacaggtgttgttacaccaactgcagtgatggat
ccagttagattggctgggacaactgtttcaagagcaagtcttcataatgtagatttaatt
gaagaaaaagatattcgtttactagattctgtgatgattcataaagcaggagatatcatt
ccagaggtaaccagagttttagtggataaaagaggcgcagatagtgttccttacgtcttt
ccaactcattgtccaacatgtggctctgagcttgagagaattgaatctgaagttgcttta
agatgtatgaatccgatgtgccctgccttaattaaagaaggtcttaatcactttgtttcc
agaaatgcgatgaatattgatggattaggccctcgcgtgctagagcagatgtatgacaaa
ggaattattaaaaacgttgctgacttgtattttgttacagaggaagaattactgactctt
gataaaattaaagaaaaatcagctaataatatcttaacggctattcaaaatagcaaagat
aattcattggaaaaattattatttggtttaggcattcatcacgttggtgctaaggcagct
aaattgattgcggaaaaattcaaagagttagatcacatcataacagctgaaaaagaagaa
attagtagtattgatacgattggccctgttattgctgatagtattgagaagtattttgct
aatgatgaagttcatgaattaatcgcagaattaaaacgtgccaatttaaacttaacttat
ctaggtaaaacgtcagaagacttatcagcaattgattcgccatttaaagataagacagtg
gttttaactggaaaactaactcactttaaccgaaatgaagcaaaagaaagaattgaagct
ttaggtggaaaagtgacaggaagtgtttctaaaaaaacagacattgttgtagcaggtgaa
gaggctggaagtaagttagaaaaagcgttaaaattagaagttgctgtatggaatgaagaa
caaatggtatcagccattgaaaatagtacaaaagttgaatag
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