Vibrio crassostreae: IS519_14810
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Entry
IS519_14810 CDS
T08776
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vcra
Vibrio crassostreae
Pathway
vcra03030
DNA replication
vcra03410
Base excision repair
vcra03420
Nucleotide excision repair
vcra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vcra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IS519_14810 (ligA)
03410 Base excision repair
IS519_14810 (ligA)
03420 Nucleotide excision repair
IS519_14810 (ligA)
03430 Mismatch repair
IS519_14810 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vcra03032
]
IS519_14810 (ligA)
03400 DNA repair and recombination proteins [BR:
vcra03400
]
IS519_14810 (ligA)
Enzymes [BR:
vcra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IS519_14810 (ligA)
DNA replication proteins [BR:
vcra03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IS519_14810 (ligA)
DNA repair and recombination proteins [BR:
vcra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IS519_14810 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IS519_14810 (ligA)
MMR (mismatch excision repair)
DNA ligase
IS519_14810 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IS519_14810 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
RNA_ligase
PTCB-BRCT
HHH
DZR_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
UPR29390
LinkDB
All DBs
Position
1:3257003..3259015
Genome browser
AA seq
670 aa
AA seq
DB search
MKESIQVTLEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKIEEENPELVTVDSPS
QRVGGQPLDGFTQVTHEIPMLSLDNAFSDEDLDAFNKRMSDRAPTANLKTFCCEPKLDGL
AVSLLYVNGTLVQAATRGDGATGENITENVRTISSIPLKLQGEGWPERIEVRGEVFMPKA
GFDKLNEMALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVVQGAELSNSH
YQRFLQLKGWGLPMCPETKQLTSLEIVKAYYQDIMTRRDTLAYEIDGVVIKVDDIAAQEV
LGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLH
NADEIARLGVKVGDSVIIRRAGDVIPQIVAVVQDRRPETARDIVFPDACPVCNSAVERVE
GEAVARCTGGLVCQAQRKEALKHFVSRKALDVDGLGVKVIEQLVDREMVETPADLFKLSA
GVITVLDRMGPKSAQNVVSALNKAKDTTLARFLYSLGIREVGEATAMNLAQHFKTLELVQ
AATHEQLVEVSDIGDIVASHITSFFSQEKNRAVVDQLIELGVNWPIIEEAADDQELPLEG
KVVVLTGSLSQLGRSEAKAALQALGAKVTGSVSKKTDILFAGEAAGSKLTKAQDLGIEIR
TEEDLIALIS
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaatcgattcaagttaccttagagcagttaagagaaactctgcattatcacgcc
gttcgttattacgtagaagatagccctgagatccctgatgtcgagtacgatcgcttaatg
caacaattgctaaagatcgaagaagagaatccagagctagtgacggtagattctccgagc
caacgcgttggtggtcagcctctcgatggtttcactcaagtgactcatgagatcccaatg
ctttctctggacaatgctttctctgatgaagatttggatgcgttcaataagcgaatgtct
gatagagcgccaaccgcaaacctgaagactttctgttgtgaacctaagcttgatggcctt
gcagttagcttgctctatgtgaatggtaccttagttcaggcagcgacacgtggtgacggt
gcgacgggtgaaaacatcactgaaaacgtgcgtactatcagctctatcccacttaagttg
caaggtgaaggctggccggagcgtattgaagttcgtggcgaagtgtttatgccaaaagcg
ggtttcgataagttgaatgagatggcgttgaagaaaggcgagaaagtctttgttaacccg
cgtaatgccgctgcaggtagcctgcgtcagcttgattctcgtattacagcgaaacgtcca
ttggctttctacgcatacagtgtcggtgttgttcaaggcgctgagctatcaaatagtcac
taccaacgcttcttacagcttaaaggttggggcttacctatgtgtcccgagactaagcaa
ctgacctctcttgaaatcgtgaaagcctattaccaagatattatgactcgtcgtgatact
ctggcttacgagattgatggcgttgttatcaaagttgacgacatagcggctcaagaagtg
cttggctttgttgctagagcgccacgttgggcgattgcttataagttcccagctcaagaa
gagattaccctgctcaatgacgttgagtttcaggtgggccgtactggcgcgattacgccg
gttgctaaactggaacctatcttcgttggcggcgtgacggtcagtaatgccacgcttcac
aatgccgatgagattgctcgtttaggcgtgaaggtaggcgacagcgttatcattcgccgt
gcaggtgatgttattccgcaaattgtggctgttgtacaagatcgtcgccctgaaacagct
agagacattgttttccctgatgcttgccctgtgtgtaattctgcagttgagcgcgtagag
ggtgaagctgtagcgcgttgtacaggcggtttggtgtgtcaggcgcagcgtaaagaagcg
ctcaagcattttgtgtcaagaaaggcgctggatgttgatggtcttggtgtaaaggtgata
gagcagcttgtagaccgtgaaatggtagaaacgcccgctgacctgttcaagctcagcgca
ggtgtgattacagttcttgaccgcatggggcctaaatctgcgcaaaatgtggtgagtgct
ctcaataaagccaaagacacaacattggcacgtttcctttattcgctaggtattcgagaa
gtgggcgaagcgacggctatgaacttggcgcaacactttaaaacgctggaactggttcaa
gccgcaacgcatgaacaattagttgaagtgtccgatattggtgacatcgtcgctagccat
atcacaagcttcttttcacaagagaaaaacagagcggttgtcgatcagctgatagaactt
ggtgttaactggcctattatcgaagaagctgcggatgaccaagagctaccacttgaaggt
aaggtagttgtgttgaccgggtcactttctcaactaggtcgaagtgaagctaaagcggcg
ttacaagcattaggtgcgaaagtgacgggtagcgtatctaagaaaacggacatcttgttt
gctggtgaagccgcgggttctaaattaactaaagcacaagatttaggcatcgaaataaga
acagaagaagatctaatagcccttatttcgtaa
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