Vibrio cholerae O1 El Tor MS6: MS6_0765
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Entry
MS6_0765 CDS
T03666
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vcs
Vibrio cholerae O1 El Tor MS6
Pathway
vcs03030
DNA replication
vcs03410
Base excision repair
vcs03420
Nucleotide excision repair
vcs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vcs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MS6_0765
03410 Base excision repair
MS6_0765
03420 Nucleotide excision repair
MS6_0765
03430 Mismatch repair
MS6_0765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vcs03032
]
MS6_0765
03400 DNA repair and recombination proteins [BR:
vcs03400
]
MS6_0765
Enzymes [BR:
vcs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MS6_0765
DNA replication proteins [BR:
vcs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MS6_0765
DNA repair and recombination proteins [BR:
vcs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MS6_0765
NER (nucleotide excision repair)
GGR (global genome repair) factors
MS6_0765
MMR (mismatch excision repair)
DNA ligase
MS6_0765
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MS6_0765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
BAP02420
LinkDB
All DBs
Position
1:884586..886595
Genome browser
AA seq
669 aa
AA seq
DB search
MSDVAQRLTELRKTLNEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSL
RVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSAFCCEPKLDGLA
VSLLYENGVLTRAATRGDGTTGENITENVRTIKSTPLRLQGADFPTRLEVRGEVFMPKAG
FEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELATSHY
QRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQERL
GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN
ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERVEG
EAVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRAG
ELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQQ
ASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGK
IVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFD
EQALIEFLK
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatgtcgcgcaacgattaacagaattaagaaaaaccttgaatgagcatggtgtc
cgctattacgtagaagatgcccccagcattccggatgcagaatacgatcgcttaatgcgc
gagctgctggaattggaagcggctcacccggaattgatgagctcggactcgcccagttta
cgagtcggaggacgtccgctggatgcatttgaatctgtcgtgcatgaaattccgatgtta
tcgctcgataacgcctttgatgatggtgaattagaaagcttttatcgccgtatgacggat
cggatcccggcggtacagcatagtgccttttgttgtgagccgaaactggatggcttggcg
gtcagtttactatacgaaaatggtgttctgacccgcgcggcgactcgtggtgatggtacg
accggcgaaaacatcacagaaaatgtacgtaccattaaatcaacccctttacgcctgcaa
ggcgcagattttccaactcgtcttgaagtgcgcggtgaagtgtttatgcctaaagcgggg
tttgaagcacttaacgcacgagcgcttaaaaaaggtgaaaagcagtttgtgaaccctcgt
aatgccgcggcggggagcttacgtcaactcgactctaaaattaccgcccaacgtccactg
gctttttatgcttacagtgttggtgttattgaaggcggagagttagcgaccagccactat
caacgatttttacaactcaagggctgggggctgccgatttgtccagaaaccaaactggta
acttctctcgccgaagtcaaagctttttatcaagacattttgcaacgtcgccagtctttg
gcttatgagattgatggcgtcgtcattaaagttgacgatatccagttgcaagagcgattg
gggttcgttgctagagcgccgcgctgggcgattgcctataaatttcctgcgcaggaagag
cttactttgctcaatgatgttgaatttcaggtaggtcgtactggcgcgattaccccggtt
gctaagttggagcctgtgtttgtcggtggtgttacggtaagtaatgccacattacataat
gccgatgagattgagcgtttgggagtgatggtcggagatacggtggtgatccgccgtgct
ggggatgtcatcccacaaatcgtctctgtggtattagagcgacgccctgagaatgcaaaa
tctattgtatttcctactcgttgcccagtttgtcaatcggatgttgaacgggttgaagga
gaagcggttgctcgatgttccggtggactgatttgccaagctcagcgcaaagaggcattg
aagcattttgtttctcgcaaggccatggatgtagaaggcttgggcgataaagtgattgag
caactggttgacagagaaatggtgagtacacctgctgatttattccggttaagagcggga
gagctcacgattttggagcgaatgggccccaaatcggcgcagaatgtgattgatgctctc
aataaagcgaagcaaaccacattacctaagtttttatatgcactgggtattcgtgaagtc
ggcgaggctaccgcactcaacttggctcagcactttttaagtttggaagcgattcaacaa
gcgagtttagaacaatttatcgaagttcccgatgtcggagtggttgttgcaagccattta
caggccttctttgcgcaagaccgtaaccaacaagtgatcaatgaattgctagaacaaggc
atcacatggccggcgctaacggctgcgcccgtggcggtagactctgctctagcgggcaaa
attgttgtgttaaccggcagttttactcaattgtctcgtaatgatgcgaaagccgcacta
caagctttaggtgctaaggtgacggggagcgtatcaaaaaatactgatattgtttttgca
ggagaagcagcgggctctaagctagccaaagcgaccgagttgggtatccaagtcttcgat
gagcaagcattaatcgaatttttgaaataa
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integrated database retrieval system
