Vibrio coralliilyticus OCN014: JV59_02845
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Entry
JV59_02845 CDS
T03497
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vct
Vibrio coralliilyticus OCN014
Pathway
vct03030
DNA replication
vct03410
Base excision repair
vct03420
Nucleotide excision repair
vct03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vct00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JV59_02845 (ligA)
03410 Base excision repair
JV59_02845 (ligA)
03420 Nucleotide excision repair
JV59_02845 (ligA)
03430 Mismatch repair
JV59_02845 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vct03032
]
JV59_02845 (ligA)
03400 DNA repair and recombination proteins [BR:
vct03400
]
JV59_02845 (ligA)
Enzymes [BR:
vct01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JV59_02845 (ligA)
DNA replication proteins [BR:
vct03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JV59_02845 (ligA)
DNA repair and recombination proteins [BR:
vct03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JV59_02845 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JV59_02845 (ligA)
MMR (mismatch excision repair)
DNA ligase
JV59_02845 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JV59_02845 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DUF4874
DNA_pol_lambd_f
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AIS54108
LinkDB
All DBs
Position
1:603092..605101
Genome browser
AA seq
669 aa
AA seq
DB search
MSQEIQERLNQLRETLHYHGVKYYVEDNPEVPDAEYDRLMRELLELEAEHPDLVSIDSPS
QRVGGQPLDGFQSVAHEIPMLSLDNAFDDEELESFHKRMSDRIPTAEFNVFCCEPKLDGL
AVSLLYENGILVQAATRGDGTTGENITENVRTIKSIPLKLSGQGWPQRIEVRGEVFMPKE
GFDKLNQQAQKKGEKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSVGVVEGIALSDSH
YERFLQLKGWGLPMCPETRRVANLTEVKAYYQDILERREALPYEIDGVVIKVDDIALQEQ
LGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLH
NADEIERLGVKVGDSVIIRRAGDVIPQIVSVIEERRPDNARDIVFPERCPVCCSEVERIE
GEAVARCSGGLVCQAQRKEALKHFVSRKALDVDGLGEKVIEQLVDREMVETPADLFKLSA
GVITVLDRMGPKSAQNIVDALNQAKLTTLPRFLYSLGIREVGEATAANLAQHFKTLDSVK
AANHEQLIEVSDIGDIVASHVIAFFAQDKNQQVIQDLLDQGIEWPEIEEQSEDTPQPLAG
KTVVLTGSLSQLSRNDAKAALQALGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIK
TEQDLVDLI
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagagattcaagaaagactcaatcaattacgcgaaacgctccattaccacgga
gttaagtactatgtagaagacaatccagaggttcctgatgcggaatatgatcgtctgatg
cgtgagttattggaacttgaggcagagcatccagatttggtgagtattgattctccaagt
cagcgagtcggtgggcagccacttgacggatttcaatcggtggcgcatgaaattccgatg
ctgtctctggacaacgctttcgatgacgaagagttagaaagcttccataagcgtatgtct
gatcgtattccaacggcagaattcaatgtattttgttgtgaacctaagctagatggctta
gccgttagcttattatatgaaaatggcatcttagttcaggctgctactcgtggcgacggt
actactggtgagaacattactgagaatgttcgtactatcaaatcgatcccgctgaagttg
agtggtcaaggttggccgcaacgtattgaggtacgtggtgaagtctttatgccaaaagaa
ggcttcgacaaattgaaccaacaagcccagaaaaagggtgagaaagtctttgtcaaccca
cgtaacgcagcagcaggaagtctgcgtcagttggattcccgtattacggccacacgtcct
cttagcttctacgcatacagcgttggtgttgtggaaggaattgcattgtctgacagccac
tatgagcgctttctgcaactgaaaggctgggggctgccaatgtgtcctgaaactcgtcga
gttgctaatttgaccgaagtaaaagcctactatcaagatatactagagcgccgagaagct
ttaccgtatgaaatcgatggggttgtgattaaagtcgacgatattgcattacaagaacaa
ttaggctttgttgctagagcaccacgatgggcgattgcttacaagtttcctgcgcaagaa
gagatcaccttgcttaatgatgttgagttccaagtcggacggactggagcgattacacct
gttgccaaactggaacccgtgtttgttggcggtgtgacagtaagtaacgcaactttacac
aatgcggatgaaattgaacgccttggcgtgaaagttggtgatagcgtcatcattcgtcgc
gcaggagatgtaattccacaaattgtttctgtgattgaagagcgtcgaccagataatgct
cgcgacatcgtattccctgagcggtgccctgtgtgttgctcagaagtggagcgtattgaa
ggtgaagcggttgctcgttgctctggcggtttagtgtgccaggcgcaacgtaaggaagct
cttaaacacttcgtgtcgcgcaaagctcttgatgttgatggactcggcgaaaaggtgatt
gaacagctagtggatcgcgagatggtcgaaacaccagcagacttattcaaactatctgca
ggtgtaataactgtcctagatcgtatgggcccgaaatcggcgcagaatattgttgatgca
ttaaaccaagctaagttgacaacactacctcgattcctctactcccttggtattcgagaa
gtcggcgaagccacagcagcgaatctcgctcagcactttaaaactctggattcagtaaaa
gctgctaatcacgaacagctcattgaggtctctgatattggtgacattgttgcgagccat
gttattgctttctttgcacaggataaaaaccaacaagtcattcaagaccttctcgaccaa
gggatagaatggcctgagattgaagagcagagcgaagacactccccaaccgttagctgga
aaaacggtggttcttacgggctccttgtcacagttatctagaaatgatgcgaaagctgca
ctgcaggcgctaggtgctaaagtgacgggtagtgtgagcaaaaaaacagacattttattt
gctggtgaaaatgcaggctctaaactagcaaaagcacaagaattaggtatagaaattaaa
acggagcaggacttagtcgatctgatctaa
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