Vibrio cholerae O49 1154-74: VAA049_2775
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Entry
VAA049_2775 CDS
T03828
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vcx
Vibrio cholerae O49 1154-74
Pathway
vcx03030
DNA replication
vcx03410
Base excision repair
vcx03420
Nucleotide excision repair
vcx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vcx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VAA049_2775 (ligA)
03410 Base excision repair
VAA049_2775 (ligA)
03420 Nucleotide excision repair
VAA049_2775 (ligA)
03430 Mismatch repair
VAA049_2775 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vcx03032
]
VAA049_2775 (ligA)
03400 DNA repair and recombination proteins [BR:
vcx03400
]
VAA049_2775 (ligA)
Enzymes [BR:
vcx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VAA049_2775 (ligA)
DNA replication proteins [BR:
vcx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VAA049_2775 (ligA)
DNA repair and recombination proteins [BR:
vcx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VAA049_2775 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VAA049_2775 (ligA)
MMR (mismatch excision repair)
DNA ligase
VAA049_2775 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VAA049_2775 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DZR_2
A24_N_bact
Motif
Other DBs
NCBI-ProteinID:
AKB03726
UniProt:
A0A5B1C3X7
LinkDB
All DBs
Position
complement(3071589..3073598)
Genome browser
AA seq
669 aa
AA seq
DB search
MSDVAQRLTELRKTLHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELMSSDSPSL
RVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSAFCCEPKLDGLA
VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAG
FEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELATSHY
QRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQERL
GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN
ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERVEG
EAVARCSGGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRAG
ELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQQ
ASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGK
IVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVFD
EQALIEFLK
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatgtcgcgcaacgattaacagaattaagaaaaaccttgcatgagcatggtgtc
cgctattacgtagaagatgcccccaccattccggatgcagaatacgatcgcttaatgcgc
gagctgctggaattggaagcggctcacccggaattgatgagctcagactcgcccagttta
cgagtcggaggacgtccgcttgatgcatttgaatctgtcgtgcatgaaattccgatgtta
tcgctcgataacgcctttgatgatggtgaattagaaagcttttatcgccgtatgacggat
aggatcccggcggtacagcatagtgccttttgttgtgagccgaaactggatggcttggcg
gtcagtttactatacgaaaatggtgttctgacccgcgcggcgactcgtggtgatggtacg
accggcgaaaacatcacagaaaatgtacgtaccattaaatcaatccctttacgcctgcaa
ggcgcagattttccaactcgtcttgaagtgcgcggtgaagtgtttatgcctaaagcgggg
tttgaagcacttaacgcacgagcgcttaaaaaaggtgaaaagcagtttgtgaaccctcgt
aatgccgcggcggggagcctacgtcaactcgactctaaaattaccgcccaacgtccactg
gctttttatgcttacagtgttggtgttattgaaggcggagagttagcgaccagccactat
caacgatttttacaactaaagggctgggggctgccgatttgtccagaaaccaaactggta
acttctctcgccgaagtcaaagctttttatcaagacattttgcaacgtcgccagtctttg
gcttatgagattgatggcgtcgtcattaaagttgacgatatccagttgcaagagcgattg
gggttcgttgctagagcgccgcgctgggcgattgcctataaatttcctgcgcaggaagag
cttactttgctcaatgatgttgaatttcaggtaggtcgtactggcgcgattaccccggtt
gctaagttggaacctgtgtttgtcggtggtgttacggtaagtaatgccacattacataat
gccgatgagattgagcgtttgggagtgatggtcggagatacggtggtgatccgccgtgct
ggagatgtcatcccacaaatcgtctctgtggtattagagcgacgccctgagaatgcaaaa
tctattgtatttcctactcgttgcccagtttgtcaatcggatgttgaacgggttgaagga
gaagcggttgctcgatgttccggtggactgatttgccaagctcagcgcaaagaggcattg
aagcattttgtttctcgcaaggccatggatgtagaaggcttgggcgataaagtgattgag
caactggttgaccgagaaatggtgagtacacctgctgatttattccggttaagagcggga
gagctcacgattttggagcgaatgggccccaaatcggcgcagaatgtgattgatgctctc
aataaagcgaagcaaaccacattacctaagtttttatatgcactgggtattcgtgaagtc
ggcgaggctaccgcactcaacttggctcagcactttttaagtttggaagcgattcaacaa
gcgagtttagaacaatttatcgaagttcccgatgtcggagtggttgttgcaagccattta
caggccttctttgcgcaagaccgtaaccaacaagtgatcaatgaattgctagaacaaggc
atcacatggccggcgctaacggctgcgcccgtggcggtagactctgctctagcgggcaaa
attgttgtgttaaccggcagttttactcaattgtctcgtaatgatgcgaaagccgcacta
caagctttaggtgctaaggtgacggggagtgtatcaaaaaatactgatattgtttttgca
ggagaagcagcgggctctaagctagccaaagcgaccgagttgggtatccaagttttcgat
gagcaagcattaatcgaatttttgaaataa
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integrated database retrieval system
