Veillonella dispar: NCTC11831_00942
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Entry
NCTC11831_00942 CDS
T05848
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vdn
Veillonella dispar
Pathway
vdn03030
DNA replication
vdn03410
Base excision repair
vdn03420
Nucleotide excision repair
vdn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC11831_00942 (ligA)
03410 Base excision repair
NCTC11831_00942 (ligA)
03420 Nucleotide excision repair
NCTC11831_00942 (ligA)
03430 Mismatch repair
NCTC11831_00942 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vdn03032
]
NCTC11831_00942 (ligA)
03400 DNA repair and recombination proteins [BR:
vdn03400
]
NCTC11831_00942 (ligA)
Enzymes [BR:
vdn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC11831_00942 (ligA)
DNA replication proteins [BR:
vdn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC11831_00942 (ligA)
DNA repair and recombination proteins [BR:
vdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC11831_00942 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC11831_00942 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCTC11831_00942 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC11831_00942 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_3
HHH
RNA_ligase
DUF4796_N
Zn_ribbon_RlmA
Motif
Other DBs
NCBI-ProteinID:
VEG93509
LinkDB
All DBs
Position
1:996288..998291
Genome browser
AA seq
667 aa
AA seq
DB search
MNPKDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIVPSSPTQR
VGMKVEGSFEKVVHGRPMLSLSNVFSADEVRAFANRVEKELGHKPSAYVVELKIDGLAVN
LHYENGMFVRAVTRGDGRVGEDVTANVRTIKSIPLYLENAPEFIEVRGEAYMPHSEFKRI
NEERDEEGLPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSEEGASIHSQEELLKS
LESFKFSVNPHYRVCQTIDEVIETINYWDEKRHDLPYDTDGMVIKVNSFDDQEALGSTAK
DPKWATAYKYPPEEVETILKDITINVGRTGVLTPTGELESVFVSGTNVSRVTLHNQDFIN
EKDIRIGDHVIIHKAAEIIPEVIRVVPEKRTGSEVPFTIPNTCPVCESPAVRREGEAAVR
CTNKHCPAIEKEQIIHFASRDAMNIDGLGPSIVENLINNKLITNVVDLYHLTVDQLVTMD
RMGKKSAENLVKAIADSKTRGLDRVLYGLGIRLIGSKAAATIANVVKSMERFMTITKEEL
VAVEEIGPTMADSIVEYRQDSAHVEIIEGLIAAGLKMTVDVVEAAGNQMEGEIVVLTGKL
EVMGRSEAGKILEAHGAKVTGSVSKKTTLVIAGEDSGSKLTKANELGIRVMNEEEFVELL
KDLGEIQ
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaatccaaaagatagaattaaagagttacaacaagagctaactcatgcacagtattta
tactatgtaaaagatgctcctacaatgagtgactttgaatacgataaaaaatatcgagag
ctcgttgatttagaaacagctcatcctgaatatattgtgccatcatctccaacacaacgt
gtaggcatgaaggtggaaggttcctttgaaaaggtcgttcacggccgccctatgttgagc
ttatctaatgtatttagtgctgatgaagtgcgtgcgtttgcaaatcgcgtagaaaaggaa
ttgggccataagccttctgcttatgtagtagaacttaaaatagatggcttagctgttaat
ttgcactatgaaaatggcatgtttgtacgtgctgtaacacgtggtgatggccgtgttggt
gaagatgttacagccaatgtacgaacaattaagtccattcccttatatctagaaaatgca
cctgaatttattgaggttcgcggtgaagcctacatgcctcatagcgaatttaaacgcata
aatgaagaacgtgatgaagagggcttgccaaccttcgtaaatcctcgtaatgctgcggca
ggctccttgcgtcaacaagatcctgctattacagcaagtagaaacctagctttctttgcc
tatgctattggctctgaagaaggtgctagtattcatagccaagaggaattacttaaaagc
ctagaaagctttaagttctctgtaaatcctcactatcgcgtgtgtcaaaccattgatgaa
gttattgaaactatcaattattgggatgaaaagcgtcatgacttgccatacgatactgac
ggtatggttattaaagtaaatagctttgatgatcaagaggcacttggcagtactgctaag
gatcctaagtgggctacagcttacaaatatccgccagaagaggtagaaaccattcttaag
gatattactatcaatgtggggcgtacgggggttcttactccaactggtgaattggaatca
gtattcgtgtctggtacaaatgtgagtcgtgttacattacataatcaagacttcatcaat
gaaaaagatattcgcattggtgaccatgtcatcattcacaaggcagccgaaatcattcct
gaagttattcgcgtagttcctgaaaaacgtactggttctgaagttcctttcacaattcct
aacacatgtcctgtatgcgaatctcctgcagttcgtcgcgaaggggaagcggctgtacgt
tgtacgaataaacattgccctgctattgaaaaagagcaaatcattcactttgcctctcgc
gatgctatgaatatcgatggtctcgggcctagcattgtagaaaacctaatcaataacaaa
ttaattacaaatgttgttgatttatatcatttgacggtagatcaactagttaccatggac
cgaatgggcaagaaatctgctgagaatttggtaaaagctattgcagattctaaaactcgt
ggtttggaccgcgtattatatggtcttggtattcgtctaattggctctaaagcagctgca
acaattgctaatgtcgtgaaatctatggaacggtttatgactatcactaaggaagagctc
gttgcggtggaagagattggtcctacaatggcagatagtattgttgaataccgtcaagat
tctgctcatgtagaaatcattgaaggtttaatagcggcaggacttaagatgactgtagat
gttgttgaagctgcaggcaatcaaatggaaggggaaatcgtcgttcttacagggaagctt
gaagttatgggccgcagtgaagctggtaagattcttgaagctcatggggctaaggttaca
ggttccgtctctaagaaaacaacccttgttattgctggcgaagatagtggtagtaagctt
actaaagcaaatgaattgggtattcgtgttatgaatgaagaggaatttgtagaactactt
aaggaccttggagaaatccaatag
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