Verrucomicrobium sp. GAS474: SAMN05444156_2937
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Entry
SAMN05444156_2937 CDS
T09813
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
veg
Verrucomicrobium sp. GAS474
Pathway
veg03030
DNA replication
veg03410
Base excision repair
veg03420
Nucleotide excision repair
veg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
veg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAMN05444156_2937
03410 Base excision repair
SAMN05444156_2937
03420 Nucleotide excision repair
SAMN05444156_2937
03430 Mismatch repair
SAMN05444156_2937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
veg03032
]
SAMN05444156_2937
03400 DNA repair and recombination proteins [BR:
veg03400
]
SAMN05444156_2937
Enzymes [BR:
veg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SAMN05444156_2937
DNA replication proteins [BR:
veg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SAMN05444156_2937
DNA repair and recombination proteins [BR:
veg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SAMN05444156_2937
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAMN05444156_2937
MMR (mismatch excision repair)
DNA ligase
SAMN05444156_2937
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SAMN05444156_2937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
PTCB-BRCT
HHH_5
HHH
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
SDU26375
LinkDB
All DBs
Position
I:3399222..3401348
Genome browser
AA seq
708 aa
AA seq
DB search
MSESGKNPEERHSELVAEINRHNHAYYVDAAPTISDQEYDLLYRNLLKLEQQHPDLITSD
SPTQVVGEGSWSRMQGSWSQIQGSWEQLNTRIGPALTYFASVPHAAPMLSLDNTYSKEEV
EEFTKRVAKLLLGKPHSFVVEPKVDGVAVSLRYEGGRLVLGATRGDGKQGDDVTQNLRTI
RRLPLTLAPVDGASLPEVLEVRGEVYFPSAGFAEMNRKRVEAGEAPFANPRNAAAGSLKQ
LDPKLVAQRPLAIVLYGPGEMKGVDCATQEEWFALLPRFGLPTPSWHRPCADTAAVLAAI
EELDALRKTFPYETDGAVVKLNEWPLRAQLGLTSKAPRWAMAYKYSAERARTKLNDVTFQ
VGRTGTITPVAEMEPVFVSGSTVRRATLHNLDDLERKGVRKGDFVYVEKAGEVIPAVVGV
DLEARTGAEEPVVAPALCPSCQAPLTREGIFLRCTNTARCPEQVKQRLLHYAQRSAMDIE
NLGDAAAEQLIQKGLVRDPVDLYGLALEPVMALDRMAEKSARNLLDGIAASKERPLGKFL
FALGIIHVGATSGNDLAAHFGSLEALMNASLEEIESVPQIGGVMAKSLRDYFDNPENRAL
LQRYLDAGLRFTVPQKATEGPLFGKTFVLTGTLSAPREAFAERIRAAGGKIAGSVSKKTD
YLLAGEGGGQKAKDAKKHEVPVLDEAAFERLVRGEEPFLPAGTFQLEG
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaagcggcaaaaatcccgaagaacgacactccgaattggtggccgaaatcaat
cgtcataatcacgcctattatgtcgatgcagcgcccacaatttccgaccaggaatacgat
ctcctctatcgaaatctcctcaaacttgaacaacaacaccctgatctcatcacttcagac
tcccctactcaggtagtgggagaaggctcttggagccgcatgcaagggtcctggagccaa
attcaaggatcttgggagcaactcaatacgagaataggacctgcacttacctacttcgca
tcggtcccccatgccgccccgatgctctccctcgacaacacctattccaaggaggaggtc
gaggaattcacgaagcgggtcgccaagctcctcctcggcaagccccattccttcgtcgtc
gagccgaaggtcgacggcgtcgccgtcagcctccgctacgagggaggccgcctcgtcctc
ggcgcgacccggggcgacggtaagcagggcgacgacgtcacccagaacctccgcaccatc
cgccgccttcccctcacccttgcccccgtcgacggcgcctccctccccgaggtcctcgag
gtccggggcgaggtctacttcccctccgccgggttcgccgagatgaaccggaagcgggtc
gaggcgggggaggcccccttcgccaacccccgcaacgccgccgccggatcgctgaagcag
ctcgacccgaagctcgtcgcccagcgtcccctcgccatcgtcctctacgggccgggggag
atgaagggggtcgattgcgccacgcaggaggaatggttcgccctcctcccccggttcggc
ctccccaccccctcgtggcatcgcccctgcgccgacaccgccgccgtcctcgccgccatc
gaggaactcgacgcgctgcggaagaccttcccctacgagaccgacggggccgtcgtgaag
ctcaacgaatggcccctccgcgcccagctgggcctcacctcgaaggccccccgctgggcg
atggcctacaagtacagcgcggaacgggcgcggacgaagctgaacgacgtcaccttccag
gtcggccgcaccgggacgatcacccccgtcgccgagatggagccggtcttcgtctcgggc
tcgacggtgcggcgggcgaccctccacaacctcgacgacctggagcggaagggtgtgcgg
aagggcgacttcgtctacgtcgagaaagccggggaggtcatccccgccgtcgtcggcgtc
gacctcgaggcccggaccggggccgaagagccggtcgtcgcccccgccctctgcccctcc
tgccaggcccccctcacccgcgaggggatcttcctccgctgcacgaacaccgcccgctgc
ccggaacaggtgaagcaacggctcctccactacgcccagcggtcggcgatggacatcgag
aacctcggcgacgcggcggccgaacagctcatccagaagggcctcgtccgcgaccccgtc
gatctctacggcctcgccctcgagccggtcatggccctcgaccggatggccgagaagtcg
gcccggaacctcctcgacggcatcgcggcgagcaaggagcggcccctcggcaagttcctc
ttcgccctcggcatcatccacgtcggggcgacgtcggggaacgacctcgccgcccacttc
ggctccctggaggccctcatgaacgcctcgctggaggagatcgagagcgtcccgcagatc
ggcggcgtcatggcgaagagcctccgcgattatttcgacaacccggagaaccgggccctc
ctccaacgctacctcgacgccgggctccgcttcaccgtcccgcagaaggcgaccgagggg
cccctcttcggcaagaccttcgtcctcaccggcaccctctccgccccccgcgaggccttc
gccgaacggatccgcgccgccggggggaagatcgcggggagcgtcagcaagaagaccgac
tacctcctcgccggggagggcggcggccagaaggcgaaggacgcgaagaagcacgaagtc
ccggtcctcgacgaagccgccttcgagcggctggtccggggcgaggagccctttctcccg
gcagggacattccaactggaaggctga
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