Verminephrobacter eiseniae: Veis_4463
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Entry
Veis_4463 CDS
T00460
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vei
Verminephrobacter eiseniae
Pathway
vei03030
DNA replication
vei03410
Base excision repair
vei03420
Nucleotide excision repair
vei03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Veis_4463
03410 Base excision repair
Veis_4463
03420 Nucleotide excision repair
Veis_4463
03430 Mismatch repair
Veis_4463
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vei03032
]
Veis_4463
03400 DNA repair and recombination proteins [BR:
vei03400
]
Veis_4463
Enzymes [BR:
vei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Veis_4463
DNA replication proteins [BR:
vei03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Veis_4463
DNA repair and recombination proteins [BR:
vei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Veis_4463
NER (nucleotide excision repair)
GGR (global genome repair) factors
Veis_4463
MMR (mismatch excision repair)
DNA ligase
Veis_4463
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Veis_4463
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
MctB
DUF4796_N
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
ABM60164
UniProt:
A1WRA7
LinkDB
All DBs
Position
complement(4930834..4932915)
Genome browser
AA seq
693 aa
AA seq
DB search
MADPLDHCPDPAQMDPAQADARIRALREQLVHWAHQYHVLDAPSVPDAEYDRAFQALQAL
EAAHPALITPDSPTRRVQGAVLQGLTPVRHALPMLSIQTETDTGAGGAQAFDARVRRELG
LTDADPAIEYVVEPKFDGLAMGLRYENRRLVQAATRGDGEIGEDVTHNIRTIRQIPLGLP
DDAPALLEVRGEVYMRRADFDALNQRQRAQSGKTFVNPRNAAAGAVRQLDANITAQRPLR
FFAYGLGAVTAPGEGGPAWRTHYALLQTLKSWGFPVAEQVGIAHGASQLAALHEQIGARR
DALPYDIDGVVYKVNALQLQRDLGFKTREPRWAVAHKYPAQEMPTRVEGIELQVGRTGKL
TPVARLAPVFVGGVTVTNATLHNLFEIRKKQVRVGDTVTVRRAGDVIPEVVGVLPGQRSA
YVANFRMPAHCPVCGSAVVREKGEANHRCTGGLFCAAQRKEALLHFAARRALDIEGLGDK
LVDQLVDAELVRGLPDLYRLDLVALSALDRMAEKSAQNLLDALEKSRQTTLPRFLFGLGL
RHVGEATAKDLARHFGTLDAIMNASVEQLLQVSDIGPVVAQSLHCFFQQPHNREVVAQLR
ACGLRWPEGAPPERPAQRLAGKSVVLTGTLPTLGRDAARDLLEAAGAKVTGSVSKKTSYL
IAGAEAGSKLAKARELGIPVLDEAGMLALLAGE
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaccccctggatcattgcccggacccggcgcagatggaccccgcgcaggcggac
gccaggatccgcgcactgcgcgagcaactggttcactgggcccaccaataccatgtgctg
gacgcgcccagcgtgcccgatgccgaatacgaccgcgcattccaggccctgcaggccctg
gaggccgcccacccggcgctgatcaccccggactcgccgacccggcgcgtgcagggcgcg
gtgctgcaaggactgaccccggtgcgccacgcgctgcccatgctcagcatccagaccgaa
accgacaccggggccggcggcgcgcaagccttcgacgcccgcgtgcggcgcgaactggga
ctgaccgacgccgacccggccatcgaatacgtggtcgaacccaagttcgacggcctggcg
atgggcctgcgctacgaaaaccgccgcctggtgcaggccgccacccgtggcgatggcgag
atcggcgaagacgtgacgcacaacatccgcaccatccggcagataccgctgggcctgccc
gacgacgcccctgcgctgctggaagtgcgcggcgaggtctacatgcgccgcgccgacttc
gacgcgctcaaccagcgccagcgcgcgcaaagcggcaaaacctttgtcaacccgcgcaac
gccgcggccggcgcagtgcgccagctcgacgccaacatcaccgcccagcgcccgctgcgc
ttttttgcctacggcctgggcgccgtcaccgcgccgggcgaaggcggcccggcatggcgc
acccactacgcgctgctgcaaaccctcaaatcctggggcttcccggtcgcagagcaggtc
ggcatcgcgcatggagcaagccaactggcggcattgcatgagcagatcggcgcccgccgc
gacgcgctgccctacgacatcgacggcgtggtctacaaagtcaacgcgctgcaactgcaa
cgcgacctgggcttcaaaacccgcgaaccgcgctgggccgtggcgcacaaatacccggcg
caagagatgcccacgcgcgtcgaaggcatagaactgcaagtcggccgcaccggcaaactc
acccccgtggcccggctcgcgccggtattcgtcggcggggtcacggtgaccaacgccacc
ttgcacaacctgttcgagatccgcaaaaaacaggtgcgcgtgggcgacaccgtgaccgtg
cggcgggccggcgacgtcatccccgaggtggtcggcgtgctgcccggccagcggtcggcc
tacgtcgccaacttccgcatgcccgcccactgccccgtctgcggcagcgccgtggtgcgc
gaaaaaggcgaggccaaccaccgctgcaccggcggcctgttctgcgccgcccagcgcaaa
gaagccctgttgcactttgccgcgcgccgcgcgctggacatcgaagggctgggcgacaaa
ctggtagaccaactggtcgacgccgaactggtgcgcggcctgcccgacctgtaccggctg
gacctggtcgccctcagcgcgctcgatcgcatggccgaaaaatcggcgcaaaacctgctc
gacgcactggaaaaatcgcggcaaaccaccttgccgcgcttcctgttcggcctggggctg
cgccatgtcggcgaagccacggccaaagacctggcgcgccacttcggcacgctcgacgcc
atcatgaacgccagcgtcgagcaactgctgcaagtcagcgacatcggcccggtggtcgcg
caaagcctgcactgcttcttccagcagccgcacaaccgcgaagtggtggcgcagctacgc
gcctgcggcctgcgctggcccgaaggcgcgccccccgagcgccccgcccaacggctggcc
ggcaagagcgtggttctgaccggcaccttgcccaccctgggccgcgacgccgcgcgcgac
ctgctcgaagccgccggcgccaaagtcaccggctcggtcagcaaaaaaaccagctacctg
atcgccggcgccgaagccggcagcaaactggccaaggcccgggaactgggcatccccgtg
ctggacgaggccggcatgctggccttgctggccggcgagtga
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