Verrucosispora sp. NA02020: HUT12_07365
Help
Entry
HUT12_07365 CDS
T06958
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ver
Verrucosispora sp. NA02020
Pathway
ver03030
DNA replication
ver03410
Base excision repair
ver03420
Nucleotide excision repair
ver03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ver00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HUT12_07365 (ligA)
03410 Base excision repair
HUT12_07365 (ligA)
03420 Nucleotide excision repair
HUT12_07365 (ligA)
03430 Mismatch repair
HUT12_07365 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ver03032
]
HUT12_07365 (ligA)
03400 DNA repair and recombination proteins [BR:
ver03400
]
HUT12_07365 (ligA)
Enzymes [BR:
ver01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HUT12_07365 (ligA)
DNA replication proteins [BR:
ver03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HUT12_07365 (ligA)
DNA repair and recombination proteins [BR:
ver03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HUT12_07365 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HUT12_07365 (ligA)
MMR (mismatch excision repair)
DNA ligase
HUT12_07365 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HUT12_07365 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
HHH_8
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QKW12636
UniProt:
A0A7H8K7B7
LinkDB
All DBs
Position
1681741..1683876
Genome browser
AA seq
711 aa
AA seq
DB search
MSEEAIGEQVSAAQEAAAGAEPTPQARERHATLSQELTEHQYRYYVLDAPTVSDADFDRL
LRELEALEEEFPALRTPDSPTQRVGGTFSTDFAPVAHAERMMSLDNAFADEELAAWAERV
ERDAGGPVPYLCELKVDGLAINLTYESGRLVRAATRGDGRTGEDVTANVRSIRDVPGRLT
DSAEFGPVPELIEVRGEIYFPVAAFADLNAGLVEQGKAPFANPRNAAAGSLRQKDPRITA
SRPLCLVVHGIGARRGFQPATQSESYSALRAWGLPTSDRWRVVPDLAGVRDYIAHYAAHR
HDVEHEIDGVVVKVDPVPIQGRLGSTSRAPRWAIAFKYPPEEVNTTLLDIEVEVGRTGRV
TPRALLQPVKVAGSTVAYATLHNAREVERKGVLIGDTVVIRKAGDVIPEVLGPVVELRPP
DARAFVMPTVCPACGTPLAPAKEGDVDIRCPNSRSCPAQLRERVYHLAGRKVFDIEALGY
KSAAALLDAQVITDEGDLFSLDAEQLARSPFFVNKDGSLGSNAVKLLDNLAVAKERELWR
VLVALSIRHVGPTAAQALARHFRSVEAIDAASEEELSSVDGVGPTIAVSIREWLAVDWHR
EVIRKWADAGVRMAEEAQGEGPRPLEGVTVVVTGTLSGHSRDQAAEAIQSRGGKVSGSVS
KKTGFVVVGDNPGSKADKAAGLKVPILDEEGFQVLLDSGPEAARAVARVEE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgaggaagccatcggcgagcaggtcagcgcggcgcaggaggcggcggccggtgcc
gagccgaccccgcaggcacgggagcggcacgccacgctgagccaggagctgaccgagcac
cagtaccgctactacgtgctcgacgcgccgaccgtctcggacgccgatttcgaccggctg
ctgcgggagctggaggcgctggaggaggagttcccggcgctgcgcaccccggactcgccg
acccagcgggtcggcggcaccttctccaccgacttcgccccggtggcacacgccgaacgg
atgatgtcgctggacaacgcgttcgccgacgaggagctggcggcgtgggccgaacgggtc
gagcgggacgccggcggtccggtgccctacctgtgcgagctgaaggtcgacgggctggcg
atcaacctcacctacgagtcgggtcggctggtgcgggcggcgacccggggcgacggccgc
accggtgaggacgtcaccgccaacgtgcgcagcatccgggacgtgcccggccggttgacc
gactcggcggagttcgggccggtccccgagctgatcgaggtgcgcggcgagatctacttc
ccggtcgccgccttcgccgacctgaacgcgggcctggtcgagcagggcaaggcgccgttc
gccaacccgcgtaacgccgccgccggcagcctgcgccagaaggacccacggatcaccgcg
tcccggccgctgtgcctggtggtgcacggcatcggtgcccggcgcggcttccagccggcc
acccagtccgagtcgtactccgcgctgcgggcctgggggctgccgaccagcgaccgctgg
cgggtggtgcccgacctggccggcgtccgggactacatcgcgcactacgccgcgcaccgg
cacgacgtggagcacgagatcgacggcgtggtggtcaaggtcgacccggtgccgatccag
ggccggctcggctcgaccagccgggcgccccgctgggcgatcgccttcaagtatccgccc
gaggaggtcaacaccacgctgctcgacatcgaggtcgaggtgggacggacgggtcgggtc
acgccccgggcgctgctccagccggtgaaggtggccggctccaccgtcgcgtacgcgacc
ctgcacaacgcccgcgaggtggagcgcaagggggtgctgatcggcgacacggtggtgatc
cgcaaggccggcgacgtgatccccgaggtgctcggcccggtggtcgagctgcgtccgccc
gacgcccgggcgttcgtgatgcccaccgtctgcccggcctgtggcaccccgctcgccccg
gcgaaggagggcgacgtcgacatccgttgccccaactcgcgcagttgtccggcgcagttg
cgcgaacgggtctaccacctggccgggcgcaaggtcttcgacatcgaggcgctcggctac
aagagcgccgccgcgctgctcgacgcgcaggtcatcaccgacgagggcgacctcttctcg
ctcgacgccgagcagttggcccgctcgccgttcttcgtcaacaaggacggcagcctcggc
agcaacgcggtcaagctgctcgacaacctcgccgtcgccaaggaacgcgagctgtggcgg
gtgctggtggccctctcgatccggcacgtcgggccgaccgccgcgcaggcactcgcgcgg
cacttccggtcggtcgaggcgatcgacgccgcgtccgaggaggaactctcctccgtcgac
ggagtcggccccaccatcgcggtgagcatccgggagtggctcgccgtcgactggcaccgc
gaggtgatccgcaagtgggccgacgcgggcgtccggatggccgaggaggcgcagggggag
ggcccgcgtccgctggagggggtgaccgtggtggtcaccgggaccctgtccggtcactcg
cgcgaccaggccgccgaggcgatccagtcccggggcggcaaggtcagcggctcggtgtcg
aagaagaccggcttcgtggtggtcggcgacaatcccgggtccaaggcggacaaggcggcc
gggctcaaggtgccgatcctcgacgaggagggcttccaggtgctgctcgactccggcccg
gaggcggcccgcgcggtggcccgcgtcgaggagtga
DBGET
integrated database retrieval system
