Verrucosispora sp. TAA-831: ACQVFL_06535
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Entry
ACQVFL_06535 CDS
T11182
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vet Verrucosispora sp. TAA-831
Pathway
vet03030
DNA replication
vet03410
Base excision repair
vet03420
Nucleotide excision repair
vet03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACQVFL_06535 (ligA)
03410 Base excision repair
ACQVFL_06535 (ligA)
03420 Nucleotide excision repair
ACQVFL_06535 (ligA)
03430 Mismatch repair
ACQVFL_06535 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vet03032
]
ACQVFL_06535 (ligA)
03400 DNA repair and recombination proteins [BR:
vet03400
]
ACQVFL_06535 (ligA)
Enzymes [BR:
vet01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACQVFL_06535 (ligA)
DNA replication proteins [BR:
vet03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACQVFL_06535 (ligA)
DNA repair and recombination proteins [BR:
vet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACQVFL_06535 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACQVFL_06535 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACQVFL_06535 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACQVFL_06535 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
HHH_8
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
XUR91939
LinkDB
All DBs
Position
1420469..1422604
Genome browser
AA seq
711 aa
AA seq
DB search
MSEEAIGEQVSAAQEAAAGAEPTPQARDRHATLSQELTEHQYRYYVLDTPTVSDAEFDRL
LRELAALEEEFPALRTPDSPTQRVGGTFSTDFAPVAHAERMMSLDNAFADEELAAWAERV
ERDAGGPVPYLCELKVDGLAINLTYESGRLVRAATRGDGRTGEDVTANVRSIRDVPGRLT
DSAEFGPVPELIEVRGEIYFPVAAFADLNAGLVEQGKAPFANPRNAAAGSLRQKDPRITA
SRPLRLVVHGIGARHGFQPATQSESYSALRAWGLPTSDRWRVVPDLTGVRDYIAHYAAHR
HDVEHEIDGVVVKVDPVPIQGRLGSTSRAPRWAIAFKYPPEEVNTTLLDIEVEVGRTGRV
TPRALLQPVKVAGSTVAYATLHNAREVERKGVLIGDTVVIRKAGDVIPEVLGPVVELRPP
DARAFVMPTVCPACGTPLAPAKEGDVDIRCPNSRSCPAQLRERVYHLAGRKVFDIEALGY
KSAAALLDAQVITDEGDLFSLDAEQLARSPFFVNKDGSLGSNAVKLLDNLAVAKERELWR
VLVALSIRHVGPTAAQALARHFRSIEAIDAASEEELSSVDGVGPTIAVSIREWLAVDWHR
EVIRKWADAGVRMAEEAQGEGPRPLEGVTVVVTGTLSGYSRDQAAEAIQSRGGKVSGSVS
KKTGFVVVGDNPGSKADKAAGLKVPILDEEGFRVLLDSGADAARAVARVDE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgaggaagccatcggcgagcaggtcagcgcggcacaggaggcggcggccggcgcc
gagcccaccccgcaggcacgggaccggcacgccacgctgagccaggagctgaccgagcac
cagtaccgctactacgtgctcgacacgccgacggtctcggacgccgagttcgaccggctg
ctgcgggagttggcggcgctggaggaggagttcccggcgctgcgcacgccggactcgccg
acccagcgggtcggcggcaccttctccaccgacttcgcccccgtcgcgcacgccgaacgg
atgatgtcgctggacaacgcgttcgccgacgaggagttggcggcgtgggccgagcgggtc
gagcgggacgcgggcggcccggtgccctacctgtgcgagctgaaggtcgacgggctggcg
atcaacctcacctacgagtcgggccggctggtgcgggcggcgacccggggcgacggtcgc
accggtgaggacgtcaccgccaacgtgcgcagcatccgggacgtgcccggccgactgacc
gactcggcggagttcgggccggtccccgagctgatcgaggtgcgtggcgagatctacttc
ccggtcgccgccttcgccgacctgaacgcgggcctggtcgagcagggcaaggcgccgttc
gccaacccgcgcaacgccgccgccggcagcctgcgccagaaggacccacggatcaccgcg
tcccggccgctgcgcctggtggtgcacggcatcggtgcccggcacggtttccagccggcc
acccagtccgagtcgtactcggcgttgcgggcctgggggctgccgaccagcgaccgctgg
cgggtggtgcccgacctgaccggcgtccgggactacatcgcgcactacgccgcgcaccgg
cacgacgtggagcacgagatcgacggcgtggtggtcaaggtcgacccggtgccgatccag
ggccggctcggctcgaccagccgggcaccccgctgggcgatcgccttcaagtatccaccc
gaggaggtcaacaccaccctgctcgacatcgaggtcgaggtcggacggaccggtcgggtc
acgccccgggcgctgctccagccggtgaaggtggccggctccaccgtcgcgtacgcgacc
ctgcacaacgcgcgcgaggtggagcgcaagggggtgctgatcggcgacacggtggtgatc
cgcaaggccggcgacgtgatccccgaggtgctcggcccggtggtcgagctgcgtccgccc
gacgcccgggccttcgtcatgcccaccgtctgcccggcctgcggcaccccgctcgccccg
gcgaaggagggcgacgtcgacatccgctgccccaactcgcgcagttgcccggcgcagttg
cgcgagcgggtctaccacctggccgggcgcaaggtgttcgacatcgaggcgctcggctac
aagagcgccgccgcgctgctggacgcccaggtgatcaccgacgagggggacctgttctcg
ctcgacgccgagcagttggcccgctcgccgttcttcgtcaacaaggacggcagcctcggc
agcaacgccgtcaagctgctcgacaacctcgccgtcgccaaggaacgcgagctgtggcgg
gtgttggtggccctctccatccggcacgtcgggccgaccgccgcgcaggcgctcgcccgg
cacttccggtcgatcgaggcgatcgacgccgcctccgaggaggaactctcctccgtcgac
ggtgtcggccccaccatcgcggtgagcatccgcgagtggctcgccgtcgactggcaccgc
gaggtgatccgcaagtgggccgacgcgggcgtacggatggccgaggaggcgcagggggag
gggcctcgaccgctggagggggtgaccgtggtggtcaccggcaccctgtccggctactcg
cgggaccaggccgccgaggcgatccagtcccggggcggcaaggtcagcggctcggtgtcc
aagaagaccggtttcgtggtggtcggcgacaaccccggctccaaggcggacaaggcggcc
gggctgaaggtgccgatcctcgacgaggagggcttccgggtgctgctcgactccggcgcg
gacgcggcgcgcgcggtggcccgcgtcgacgagtga
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