Vitreoscilla filiformis: VITFI_CDS2331
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Entry
VITFI_CDS2331 CDS
T04960
Name
(GenBank) DNA ligase (NAD(+)) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vff
Vitreoscilla filiformis
Pathway
vff03030
DNA replication
vff03410
Base excision repair
vff03420
Nucleotide excision repair
vff03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vff00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VITFI_CDS2331
03410 Base excision repair
VITFI_CDS2331
03420 Nucleotide excision repair
VITFI_CDS2331
03430 Mismatch repair
VITFI_CDS2331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vff03032
]
VITFI_CDS2331
03400 DNA repair and recombination proteins [BR:
vff03400
]
VITFI_CDS2331
Enzymes [BR:
vff01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VITFI_CDS2331
DNA replication proteins [BR:
vff03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VITFI_CDS2331
DNA repair and recombination proteins [BR:
vff03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VITFI_CDS2331
NER (nucleotide excision repair)
GGR (global genome repair) factors
VITFI_CDS2331
MMR (mismatch excision repair)
DNA ligase
VITFI_CDS2331
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VITFI_CDS2331
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
ASM78109
UniProt:
A0A221KGQ0
LinkDB
All DBs
Position
2446302..2448413
Genome browser
AA seq
703 aa
AA seq
DB search
MPPSDIQLDLFVSAPAAAPEPTPPAAQAAALRERLHHLAHAYHVQDAPEVPDAEYDRLFQ
QLQALEAEHPALRTPDSPTQRVLGAVLEGFTPVRHAVPMLSIRTETDTTAQGAHEFDARV
RRELKLTENDAPIDYSAELKFDGLAINLRYEAGVLVQAATRGDGETGEDVTHNIRTIGQI
PLRLLGCTAPVLEVRGEVYMRRDDFEALNARQRALNEKTFVNPRNAAAGAVRQLDSSIAA
QRPLSFFAYGLGEVQGWDIPATHSALLDALAALGLPVCAERAVLESADGLATFHARIGAR
RDTLPFDIDGVVYKVNDRALQERLGFVTREPRWAVAHKYPAQEQMTRLLGIDIQVGRTGK
LTPVAKLEPVFVGGTTVSNATLHNEDETRRKDVRVGDVVIVRRAGDVIPEVVGVVLADRP
ADVGEPFDLYKRLSGQCPVCASPIEREEGEVDWRCTGGLTCPAQRKQALLHFASRRMMDI
EGLGDKLVDQLVDGQIVRSLPDLYKLGFTSLAALERMGDKSATNLLAAIEKSKHTTLGRF
LFSLGIRHVGESTAKDLARHFGTLERLMDARVEELLEVPDVGPVVANSLRHFFDQPIHRE
VVEQLRAAGVCWPDEIGLASDAPRPLLGKTLVLTGTLPSLSRDEAKAMIEAAGGKVSGSV
SKKTHYVVAGSEAGSKLDKAQSLGVPVLDEAGLRALLAGAEGA
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgcccccttccgacattcaacttgatttgttcgtctccgccccggcggcggcccccgaa
cccactccgccagccgctcaggcagcggcgttgcgcgagcgtttgcaccatctggcgcac
gcctaccatgtgcaagacgcccccgaagtgcccgatgcggaatacgaccgcctgttccag
caactccaagccctggaggccgagcacccagcgctgcgcacgccagattcgcccacccag
cgcgtgctgggcgccgtgctggagggcttcacgccggtgcgtcatgcggtgcccatgctg
tcgattcgcactgaaacggacaccacggcccaaggcgcccacgagttcgatgcccgcgtg
cgccgcgaactcaaactcaccgagaacgatgcgccgatcgactacagcgccgaactcaaa
ttcgatgggctggcgatcaacctgcgttacgaagccggggtgctggtgcaagcggccaca
cgcggcgacggggaaaccggcgaggacgtgacgcacaacatccgcaccatcggccaaatt
ccgctgcgtcttctgggttgcacggcgccggtgttggaggtgcgcggcgaggtgtacatg
cgccgcgatgactttgaagcgctgaacgcacgccaacgggcgctgaacgaaaaaaccttc
gtcaacccgcgcaacgcggcggcaggcgcggtgcgccagttggattcgagcatcgccgcc
cagcggccgttgagttttttcgcctatggtctgggcgaggtgcaaggctgggacattccc
gccacgcacagcgctttgttggacgctttggccgccctgggcctgcccgtgtgtgccgaa
cgggcggtgctggaaagcgccgacggcctggccaccttccatgcccgcatcggtgcccgc
cgcgacacgctgccgtttgacatcgacggcgtggtctacaaagtgaacgaccgggcgttg
caggagcgcttgggttttgtcacccgcgaaccgcgctgggcggtggcgcacaaatacccc
gcccaggagcagatgacgcgcttgctgggcatcgacatccaagtgggccgcaccggcaaa
ctcacgccggtggccaagctggaaccggtgttcgtgggcggcaccaccgtgagcaacgcc
acgctgcacaacgaggacgaaacgcggcgcaaggatgtgcgtgtgggcgatgtggtgatc
gtgcggcgcgccggcgacgtcatccccgaagtggtgggcgtggtgttggccgatcgcccc
gccgatgtgggggaacctttcgatctctacaagcgcttgagcggccagtgccccgtgtgt
gccagcccgattgaacgcgaagaaggcgaggtggattggcgctgcaccggcggcctaacc
tgcccggcgcagcgcaaacaagccctgttgcacttcgccagccgccgcatgatggacatc
gaaggcttgggcgacaaactggtggatcagttggtggacggccagatcgtgcgcagcttg
cccgatctgtacaaactcggtttcaccagtttggcggcgctggagcgcatgggcgacaaa
agcgccaccaacctgctggcggcgattgaaaagagcaaacacaccacgctggggcggttt
ttgttcagcttgggcatccgccatgtgggcgaaagcaccgccaaggacttggcgcgccat
ttcggcaccctagagcggctgatggacgcccgcgtggaagaactgctggaggtgccggac
gtgggcccggtggtggccaacagcctgcgccattttttcgatcagcccatccacagagaa
gtggtggagcaactgcgcgctgcgggtgtgtgttggccggatgaaatcgggctggcgtcc
gatgcgccgcgcccgctgttgggcaaaacgctggtgctcaccggcaccctgcccagcttg
agccgcgatgaagccaaagcgatgatcgaagcggcgggcggcaaggtgagtggttcggtg
tccaagaaaacccactacgtcgtggccggcagtgaagcgggcagcaagctggacaaagcc
cagagcctgggcgtgccggtgttggacgaagccggcttgcgggctttgctcgccggggct
gaaggggcttaa
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