Aliivibrio fischeri ES114: VF_0929
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Entry
VF_0929 CDS
T00236
Symbol
nth
Name
(GenBank) DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
vfi
Aliivibrio fischeri ES114
Pathway
vfi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vfi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VF_0929 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vfi03400
]
VF_0929 (nth)
Enzymes [BR:
vfi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
VF_0929 (nth)
DNA repair and recombination proteins [BR:
vfi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
VF_0929 (nth)
Prokaryotic type
VF_0929 (nth)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
P_gingi_FimA
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AAW85424
UniProt:
Q5E6C2
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All DBs
Position
I:complement(1023624..1024259)
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AA seq
211 aa
AA seq
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MNNVKRLEILERLRSENPNPQTELEWSTPFELLIAVLLSAQATDVSVNKATRKLYPVANT
PQSILDLGVDGLKTYIKTIGLFNTKAENVIKTCRMLIDLHDGEIPEDQDALEALPGVGHK
TANVVLNTAFGWPTIAVDTHIYRVSNRTKFAMGKTVNDVEKKLLKVVPKEFKLDVHHWLI
LHGRYTCIARKPRCGSCMIEDLCEFKEKTED
NT seq
636 nt
NT seq
+upstream
nt +downstream
nt
atgaataatgtaaaacgtttagaaattttagaacgcttacgttcagaaaatcccaatcct
caaaccgaacttgagtggtcaacaccatttgaattattaattgcagtgctgctttcagcg
caagcgaccgacgtgagtgttaacaaggcaacaagaaaattatatccagtagcaaatacc
ccacaaagcattttagatttaggggtagatggactaaaaacatacataaaaaccatcggc
ttatttaatacgaaagcagaaaatgtcattaagacctgtcgtatgcttattgatttgcat
gatggagaaattcctgaagaccaagatgcattagaagcgcttccaggtgttggacataaa
acagcaaatgtcgtattaaataccgcatttggctggcctaccattgccgttgatacacat
atttaccgcgtatctaatcgaactaaatttgccatgggtaaaacggttaatgatgtagag
aagaagctactaaaagtagttccaaaagagtttaagttagatgtccatcattggttaatc
ttacatggccgttatacttgtatagctcgcaaacctcgttgtggtagctgtatgatcgaa
gatttatgtgaattcaaagaaaaaacagaagattaa
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