Vibrio furnissii: vfu_A02632
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Entry
vfu_A02632 CDS
T01680
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vfu
Vibrio furnissii
Pathway
vfu03030
DNA replication
vfu03410
Base excision repair
vfu03420
Nucleotide excision repair
vfu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
vfu_A02632
03410 Base excision repair
vfu_A02632
03420 Nucleotide excision repair
vfu_A02632
03430 Mismatch repair
vfu_A02632
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vfu03032
]
vfu_A02632
03400 DNA repair and recombination proteins [BR:
vfu03400
]
vfu_A02632
Enzymes [BR:
vfu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
vfu_A02632
DNA replication proteins [BR:
vfu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
vfu_A02632
DNA repair and recombination proteins [BR:
vfu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
vfu_A02632
NER (nucleotide excision repair)
GGR (global genome repair) factors
vfu_A02632
MMR (mismatch excision repair)
DNA ligase
vfu_A02632
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
vfu_A02632
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
DZR_2
Motif
Other DBs
NCBI-ProteinID:
ADT87753
LinkDB
All DBs
Position
1:complement(2728882..2730891)
Genome browser
AA seq
669 aa
AA seq
DB search
MQNVEQRLTELKDTLHYHAIRYYVEDDPTIPDAEYDRLMRELLDLEARHPELVTPDSPSQ
RVGGAPLAGFEQVTHEIPMLSLDNAFDDDELNSFHRRMGDRVLAAKTAKFCCEPKLDGLA
VSLLYVDGVLVQAATRGDGTTGENITENVRTIKSIPLRLQGTGWPTRIEVRGEVFMPKAG
FEKMNAEALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVIQGGTLVDSHY
ERFLQLKGWGLPMSPETKRVASLDEVKVYYQDIMTRRSELPYEIDGVVIKVDDIALQEQL
GFVARAPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN
ADEIERLGVKIGDTVVIRRAGDVIPQIVSVVNELRPETAREILFPAQCPVCQSDVERIEG
EAVARCSGGLVCQAQRKEALKHFVSRKALDVDGLGDKVIEQLVDKEMVSTPADLFRLRAG
ELTVLERMGPKSAQNIVNALNTAKATTLPRFLYSLGIREVGEATAMNLAHHFLTLDAIRE
ATIEQLIEVPDVGTIVASHVHAFFAQERNQKVVEELIALGIHWQAIAPKTDDEPQPLAGK
VVVLTGTLSQLSRSDAKAALQALGAKVTGSVSKNTDILFAGEAAGSKLAKAQELGIEICD
EEDLIAMIR
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaacgtagagcaacgattaaccgaactcaaagatacactgcattaccatgcgata
cgttactacgtcgaagacgaccccacgattcctgatgcggaatatgaccgtttgatgcgt
gaattactggacttagaagcgcgacatccagagctggtgacgccggactcaccaagccag
cgcgtcggcggtgcaccgttggccggtttcgaacaagtgacgcatgaaatccccatgttg
tcgctggacaacgcgtttgatgatgatgaattgaacagcttccatcgccgcatgggcgat
cgcgttttggcggcgaaaacggctaagttttgctgtgagccgaaattggatggtctcgcg
gtcagcttattgtatgtggatggtgtccttgtgcaggcggcaacacgtggcgatggcacc
acgggtgaaaatatcactgagaacgtgcgtaccatcaaatcgattccgttgcggttgcaa
ggtaccggttggccgacgcgtattgaagtgcgtggtgaagttttcatgcccaaagctggg
tttgagaaaatgaatgcggaagcgctcaaaaaaggcgaaaaagtgtttgtgaacccacga
aatgccgcggcaggcagcctgcgccagttggattctcgtatcactgcgaaacgcccgtta
gcgttctatgcctacagcgtgggtgtgattcaaggcggcacactggtcgatagccattat
gagcgtttcttacagctgaaaggctgggggcttccgatgagcccagagacaaaacgcgtt
gcatctctagacgaggtaaaagtgtattaccaagacatcatgacgcgtcgcagcgaactg
ccgtatgaaattgatggcgtggtgatcaaagtggatgacattgcgctgcaagaacaactg
ggctttgtggcgcgtgcgccgcgttgggcgatcgcttacaaattccctgcacaagaagag
atgacggtgctcaacgatgtggaatttcaggtggggcgtactggcgccatcaccccggtg
gccaaactcgaacccgtgtttgttggtggggtcaccgtcagcaatgcgacactgcacaat
gcggatgaaattgagcgtttgggcgtaaaaatcggtgatacggtggtgatccgccgtgct
ggtgatgtcattccgcagatcgtttctgtcgtcaatgaactgcgcccagagaccgcgcgt
gagattcttttcccagcacagtgcccagtttgccaatccgatgttgaacggatcgaaggc
gaagctgtcgcgcgttgtagtggcggattggtgtgtcaggcgcagcgcaaagaagccctg
aagcattttgtttctcgcaaagccctagatgtggatgggttgggagacaaagtgattgaa
caactggtggacaaagagatggtgtcgacgccggcggatttgttccgattacgtgctggt
gagctgacggttttggagcgtatggggccgaaatcggcgcagaatattgtcaatgcgtta
aacactgcaaaagccaccacattgccgcgcttcttatattctttggggattcgtgaggtt
ggggaagccacggcgatgaacttagcacaccattttctaacgctggatgccattcgcgaa
gcgacgattgaacaactgatagaagtgccagacgtgggcaccatcgtggccagtcatgtt
catgctttttttgcgcaagaacggaaccaaaaagttgtcgaagagctgatcgctctggga
attcactggcaggcgattgcgcctaaaacagacgatgaaccacaaccactggcggggaaa
gtcgtggtgttgaccggaacgttgtctcagctttcacggagtgatgcgaaagctgcgtta
caagcattgggtgccaaagtgactggcagcgtttccaaaaatacggacattttgtttgcg
ggggaagctgctggctcgaaactcgctaaagcgcaagagctggggattgaaatttgcgat
gaagaagatttgattgcgatgatccgctga
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