Vagococcus fluvialis: K5K99_08810
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Entry
K5K99_08810 CDS
T07851
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vfv
Vagococcus fluvialis
Pathway
vfv03030
DNA replication
vfv03410
Base excision repair
vfv03420
Nucleotide excision repair
vfv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vfv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K5K99_08810 (ligA)
03410 Base excision repair
K5K99_08810 (ligA)
03420 Nucleotide excision repair
K5K99_08810 (ligA)
03430 Mismatch repair
K5K99_08810 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vfv03032
]
K5K99_08810 (ligA)
03400 DNA repair and recombination proteins [BR:
vfv03400
]
K5K99_08810 (ligA)
Enzymes [BR:
vfv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K5K99_08810 (ligA)
DNA replication proteins [BR:
vfv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K5K99_08810 (ligA)
DNA repair and recombination proteins [BR:
vfv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K5K99_08810 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K5K99_08810 (ligA)
MMR (mismatch excision repair)
DNA ligase
K5K99_08810 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K5K99_08810 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
5_3_exonuc
Clat_adaptor_s
DUF3010
Motif
Other DBs
NCBI-ProteinID:
UDM75459
LinkDB
All DBs
Position
1692032..1694026
Genome browser
AA seq
664 aa
AA seq
DB search
MTELNQQLAEWAHAYYVKDAPKVEDSEYDKVYHELVSLEQEHPELISNDSITQRVGGDIL
SGFSKVTHKVPMMSLNNAFNKNDLIDFENRIKKLTSMPINYMVELKIDGLAINLRYENGK
FIQGATRGDGVVGEDITHNLKTVKSIPLSLAKPLTIEVRGECYMPKKSFIELNEAREAEG
ENVFANPRNAAAGSLRQLDPKVAAKRNLSTFIYTVADTTGFDFNSQNDSLIELEELGLKI
NNERKLCHSIDEVWDYIENFRDKRHELDYEIDGIVIKVNDFTAQEEIGYTVKAPRWAIAY
KFPAEEAETVIRDIEWTVGRTGVVTPTAVMDPVQLAGTTVARASLHNVDLITEKDIRLLD
HVMIHKAGDIIPEVTRVLTDKRDETSVPYEFPTHCPTCDSELERIESEVALRCMNPMCPA
QIKEGLNHFVSRNAMNIDGLGPRVLEQMYDKDIIKNVADLYFVTEEELLTLDKIKEKSAN
NILTAISQSKNNSLEKLLFGLGIQHVGAKAAKLIAEEFGTIEQIMVAEKETINAIDTIGP
VIADSIEKYFSNEEVKELVAELKRAGVNTDYLGQTAADLASVESPFKDKVIVLTGKLTHF
NRNEAKEKIEALGGKVTGSVSKKTDIIVAGEDAGSKLEKAEKLEITVWNETQMVEAIENS
TKVD
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgacagagctaaatcagcaattagctgaatgggcccatgcttattatgttaaagacgct
cctaaagtagaagattcagaatacgacaaagtgtaccatgagctagtttctttagaacaa
gaacatccagaacttatttctaatgattcaattactcaaagagtcggtggagatatttta
tctggtttttcaaaagtaacacataaggtacctatgatgagtttaaataatgcctttaat
aaaaatgatttaatcgattttgagaatcgtattaaaaaattaacaagtatgccaataaac
tacatggttgaacttaagatagatggattagccattaacttacgatatgagaatggaaaa
tttattcaaggggcaactcgtggtgatggtgttgtcggagaagatattactcataactta
aaaaccgtgaaatcaattcctttaagtttagctaaacctttaacaattgaagttcgcggc
gagtgttatatgcctaaaaaatcatttattgagttgaacgaggcgcgtgaagcagaaggg
gaaaatgtttttgctaaccctcgaaacgcagcagcgggaagtttaagacaactagaccca
aaagttgcagctaaaagaaatttaagcacctttatttacacagttgctgatacaacaggt
tttgattttaatagtcaaaatgattcactaattgaacttgaagaattaggacttaaaata
aataatgaacgcaaactatgtcattctattgatgaggtttgggattatattgaaaacttt
agagataaacgtcatgagctagattatgaaattgacggcattgttattaaggtcaatgat
tttacagcccaagaagaaattggttacactgtaaaagcaccgcgttgggcaattgcttat
aaattcccagctgaagaagctgaaacagttattcgtgatattgaatggactgttggtaga
actggtgttgtaacaccaaccgctgtaatggatcctgtgcaattagcaggaactaccgtt
gccagagctagtcttcataatgtggacttaataactgagaaagatattcgtttattagat
cacgtaatgattcataaagcaggagatattattcctgaagtgactcgtgttttaacagat
aagagagatgagacaagtgttccttatgagtttccaactcattgtccgacttgtgattct
gagttagaaagaattgagtcagaagtagcattaagatgtatgaacccaatgtgtcctgct
caaatcaaggaagggttaaatcattttgtttcacgtaatgccatgaatattgatggctta
ggtccacgtgttttagagcagatgtatgacaaagatattatcaaaaatgtggcagactta
tattttgttacagaagaagagttgcttactttagacaaaattaaagaaaaatcagctaac
aatattttgacagcaattagtcaaagtaaaaataattctttagaaaaattattatttggt
ttaggtatccagcatgttggagcaaaagcagctaaacttatcgctgaagaatttggaaca
atcgaacagattatggtagctgaaaaagaaactataaatgctattgatacgattggtccg
gtgattgctgatagtattgaaaaatacttttctaatgaggaagtcaaagagttagtagct
gaattaaaaagagctggtgttaatacagattatcttgggcaaacagcagcagacttagcc
tctgttgagtcaccttttaaagataaggttattgtattaacaggtaaactgactcacttt
aaccgtaatgaggcaaaggaaaaaattgaagccttaggtggaaaagtgactggcagtgtc
tctaaaaaaacagatattattgtagctggtgaagatgctggtagcaaactagaaaaagct
gaaaaattagaaattacagtttggaatgaaactcaaatggtggaagccattgaaaatagt
acaaaagttgactaa
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