Vibrio gigantis: MID13_11500
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Entry
MID13_11500 CDS
T08202
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vgi
Vibrio gigantis
Pathway
vgi03030
DNA replication
vgi03410
Base excision repair
vgi03420
Nucleotide excision repair
vgi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vgi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MID13_11500 (ligA)
03410 Base excision repair
MID13_11500 (ligA)
03420 Nucleotide excision repair
MID13_11500 (ligA)
03430 Mismatch repair
MID13_11500 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vgi03032
]
MID13_11500 (ligA)
03400 DNA repair and recombination proteins [BR:
vgi03400
]
MID13_11500 (ligA)
Enzymes [BR:
vgi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MID13_11500 (ligA)
DNA replication proteins [BR:
vgi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MID13_11500 (ligA)
DNA repair and recombination proteins [BR:
vgi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MID13_11500 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MID13_11500 (ligA)
MMR (mismatch excision repair)
DNA ligase
MID13_11500 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MID13_11500 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
RNA_ligase
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
ULN63543
LinkDB
All DBs
Position
1:complement(2594634..2596646)
Genome browser
AA seq
670 aa
AA seq
DB search
MKESIQVTLEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKIEEENPDLVTVDSPS
QRVGGQPLDGFTQVTHEIPMLSLDNAFSDEDLDAFNKRMSDRAPTANLKTFCCEPKLDGL
AVSLLYVNGTLVQAATRGDGATGENITENVRTISSIPLKLQGEGWPERIEVRGEVFMPKA
GFDKLNEMALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVVEGAELSNSH
YQRFLQLKGWGLPMCPETKQLSSLEDVKAYYQDIMTRRDSLAYEIDGVVIKVDDIAVQEV
LGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLH
NADEIARLGVKVGDSVIIRRAGDVIPQIVAVVKERRPETAKEIVFPDACPVCSSAVERVE
GEAVARCTGGLVCQAQRKEALKHFVSRKALDVDGLGVKVIEQLVDREMVETPADLFKLSA
GVITVLDRMGPKSAQNVVSALNKAKDTTLARFLYSLGIREVGEATAMNLAQHFKTLELVQ
AATHEQLVEVSDIGDIVASHITSFFSQEKNRAVVEQLIELGVHWPVIEEVAGDQELPLEG
KVVVLTGSLSQLGRTEAKAALQALGAKVTGSVSKKTDILFAGEAAGSKLTKAQDLGIEIR
TEEDLIALIS
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaatcgattcaagttaccttagagcagttaagagaaactctgcattatcacgcc
gttcgttattacgtagaagatagccctgagatccctgatgtcgagtacgatcgattaatg
cagcaattgctaaagatcgaagaagagaacccagatctcgtgacggtagattctccgagc
cagcgtgttggtggtcagcctttagatggcttcactcaagtgacccatgagatcccaatg
ctttctctggacaatgctttctctgatgaagatttagatgcattcaataagcgtatgtcg
gatagagcaccaactgcgaaccttaagactttctgttgtgagcctaagcttgatggcctt
gctgtgagcttgctctatgtgaatggcaccttagttcaagctgcgactcgtggtgatggt
gcgaccggcgaaaatatcacagaaaacgtacgtacgatcagttcgattccacttaagtta
caaggcgaaggctggcctgagcgtatcgaagttcgtggtgaagtgtttatgccaaaagca
ggcttcgataaattaaatgagatggcgttgaagaaaggcgaaaaagtctttgttaaccca
cgtaatgcagcagcaggtagcttacgtcagctggattctcgtattacagcgaaacgtccg
ctggctttctatgcctacagtgttggtgttgtagagggcgctgagctttctaatagccac
tatcaacgcttcttacagctgaaaggctggggtttacctatgtgtcctgagactaaacag
cttagctcacttgaggatgtaaaggcttactatcaagacattatgacccgtcgcgattct
ctggcttatgagatcgatggcgtggtgatcaaagtcgacgatattgctgtacaagaagta
cttggctttgttgctagggctcctcgttgggcgattgcttataaattcccagctcaagaa
gagatcactctgcttaatgacgttgagtttcaggtaggccgtacaggcgctattacgcct
gttgctaaacttgaacctatctttgtcggtggtgtgacggtgagtaatgccacgttgcac
aatgctgatgaaattgctcgtttaggtgtgaaggtaggcgatagcgttattattcgccga
gctggtgatgttattccacagatcgtcgcggttgtaaaagaacgtcgtcctgagacagcg
aaagagattgttttccctgatgcttgccctgtatgtagttctgcggttgagcgtgttgaa
ggcgaagcggtagcgcgttgtactggtggcttagtctgtcaggcacaacgtaaagaagca
cttaagcattttgtgtctagaaaggcgctagacgtcgatggactgggcgtgaaagtgata
gagcagcttgtcgaccgcgaaatggtagaaacgcctgctgacttgtttaagctcagtgct
ggcgtgattactgttcttgaccgaatggggcctaaatcggcacaaaacgtggtgagtgcg
ttgaataaagctaaagacacgacattagcacgtttcctctattcactaggtattcgtgaa
gttggtgaagcaacagctatgaatctagcacaacactttaaaacgctggagctggttcaa
gccgcaacgcatgaacaattagttgaagtgtcagatattggtgacatcgttgctagccac
ataaccagctttttctcacaagagaaaaacagagcagtcgtcgaacagctgatagagctt
ggtgtacattggcctgtaatcgaagaagttgcaggtgatcaagaattgccattagaaggt
aaggtggttgtgttaacggggtcattgtctcagctaggacgcactgaagccaaagcagcg
ttgcaagctctcggtgctaaagtcacaggcagcgtatctaagaaaaccgatatcttgttt
gctggtgaagctgctggttctaaattaaccaaagcgcaagatttaggtatcgaaataaga
actgaagaagatctaattgcacttatttcgtaa
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integrated database retrieval system
