Variibacter gotjawalensis: GJW-30_1_01856 Help Entry GJW-30_1_01856    CDS       T05320                                  Symbol ligA Name (GenBank) DNA ligase   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism vgo  Variibacter gotjawalensis Pathway vgo03030   DNA replication vgo03410   Base excision repair vgo03420   Nucleotide excision repair vgo03430   Mismatch repair Brite KEGG Orthology (KO) [BR:vgo00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     GJW-30_1_01856 (ligA)    03410 Base excision repair     GJW-30_1_01856 (ligA)    03420 Nucleotide excision repair     GJW-30_1_01856 (ligA)    03430 Mismatch repair     GJW-30_1_01856 (ligA)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:vgo03032]     GJW-30_1_01856 (ligA)    03400 DNA repair and recombination proteins [BR:vgo03400]     GJW-30_1_01856 (ligA) Enzymes [BR:vgo01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      GJW-30_1_01856 (ligA) DNA replication proteins [BR:vgo03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      GJW-30_1_01856 (ligA) DNA repair and recombination proteins [BR:vgo03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      GJW-30_1_01856 (ligA)    NER (nucleotide excision repair)     GGR (global genome repair) factors      GJW-30_1_01856 (ligA)    MMR (mismatch excision repair)     DNA ligase      GJW-30_1_01856 (ligA)   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       GJW-30_1_01856 (ligA) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 PTCB-BRCT Nlig-Ia Motif Other DBs NCBI-ProteinID:  BAT59325 UniProt:  A0A0S3PTT4 LinkDB All DBs Position 1902398..1904491 Genome browser AA seq 697 aa AA seqDB search MAKDVDALSEKQAKTEHARLHAELLEHEKRYYQDDKPTVTDAEYDALRQRYRAIEERFPD LKTSESLSLKVGAAPSGRFAKIKHSVPMLSLDNAFADEDVEDFVQRIRRFLRLGETEPLA MTAEPKIDGLSMSLRYEGGKLVNAATRGDGAVGEDVTANIRTLKDVPQKLSGKGIPDIAE VRGEVYMTKADFLALNERQKAAGKELYVNPRNTAAGSLRQKDASITASRPLRFFAYAWGR MSEMPADTQSGMVKWLGKVGFHTNPIFKLCHSSDDLLKVYELIGSRRAELDYDIDGVVYK VDRLDWQERLGFVSRNPRWAIAHKFPAEQATTIIRDIEIQVGRTGALTPVAKLEPVGVGG VIVQNATLHNADEIKRLDVRIGDTVMIQRAGDVIPQVLGIVPEKRPKGTEEYEFPKKCPC SLKTPVVRELNSAGTEGVRFRCSGEFACPFQKTEHLKLFVSRSAFDIDGLGGKQIDYFFE QGWVKEPADIFTLEKRNGKNFRLEDIEGYGETSVRNLFGAIGSRRDIALERFIFSLGIRH VGDTTARALARGYGTWQAFHDAALLVAKGDDEARVEMDALDQIGDTVIDAIATYFKEKHN LGIVERLTAEVKIEDAEKPVADTAVAGKTVVFTGSLEKMTRDEAKAMAERLGAKVAGSVS KKTDYVVAGAEAGSKLKKAQELGVAILTEDEWLKMVG NT seq 2094 nt NT seq  +upstreamnt  +downstreamnt atggcgaaagacgtcgacgcactgtcggaaaagcaggcgaaaaccgagcatgcgcggctg cacgccgagttgctcgagcacgagaagcgctattaccaagacgacaagccgaccgtcacg gacgccgaatacgacgcgcttcgccaacgctatcgcgcgatcgaagagcgctttccggat ctcaaaacgagcgagagcctgtcgctcaaagtaggcgcggcgccgtccggccgcttcgcg aagatcaagcactctgtaccgatgctctcgctcgacaacgcgtttgcggatgaggatgtc gaggatttcgtccagcgcatccgccgcttcctgcgcctcggcgagaccgagccgctggcg atgaccgcagagccgaagatcgatggcctctcgatgtcgcttcgctacgagggcggcaag ctcgtcaacgcagcgacgcgcggcgacggcgcggtcggcgaagacgtcacggcgaatatc cgcacgctgaaggatgtgccgcagaagctctccggcaaaggcatcccggacatcgccgaa gtgcgcggcgaagtctacatgacgaaggctgacttcctcgcactcaacgagcgccagaag gccgccggcaaggagctttacgtcaacccgcgcaacacggcggcggggtcactccggcaa aaagacgcgagcattacggcctcgcgccccttacgctttttcgcctatgcgtggggccgc atgagcgagatgccggcggacacgcaatccggcatggtgaagtggctcggcaaggtcggc ttccacaccaacccgattttcaagctctgccattcgtccgacgatttgctcaaggtctac gagctgattggctcgcgccgcgccgaactcgactacgatatcgacggcgtcgtctacaaa gtcgatcggttggattggcaggaaaggctcggcttcgtctcgcgcaatccccgttgggcg atcgcgcacaaattcccggccgagcaggcgacaacgatcattcgcgacattgagatccaa gtcggccgcaccggtgcactgacgccggtcgcgaaattggagccggtcggcgtcggcggt gtgatcgtgcagaatgcgacactgcacaatgcggacgagatcaaacggctcgatgtgcgt atcggcgacaccgtgatgatccagcgcgccggcgatgtgatcccgcaagtgctcggcatc gtgccggagaagcggcctaaaggcaccgaggaatacgagtttcccaagaaatgcccgtgc tcgcttaaaacgccggtggtgcgcgaactcaattcggccggcaccgagggcgtgcgcttc cgctgctcgggtgaattcgcgtgcccgttccagaagaccgagcacctgaaactcttcgtc tcgcgcagcgcgttcgacatcgacggcctcggcggcaagcagatcgattacttcttcgag caaggctgggtaaaggagcccgcggatatcttcacgttggaaaagcgcaacggcaaaaac ttccgtcttgaggatatcgaaggctacggcgaaacgtcggtgcgcaatctattcggcgcg atcggcagccgccgcgatatcgcgctcgaacgtttcatattctcgctaggcatccgccat gtcggcgacaccacggcgcgtgcgctcgcgcgcgggtacggcacgtggcaggcattccac gatgcggctctcctcgttgcaaaaggtgacgatgaagcgcgcgtcgagatggatgctctc gatcagatcggcgacacggtgatcgatgcgatcgcgacgtatttcaaggagaagcacaat ctcggcatcgtcgagcggctgaccgccgaagtgaaaattgaagacgccgaaaagcccgtc gccgatacggcggtggccggcaagactgtggtgttcacgggatcgcttgagaagatgacg cgcgacgaagccaaagcgatggccgagcgtctcggcgcgaaagtcgcgggctctgtgtcg aagaagacggactacgtcgtcgcgggtgcggaagccggatcgaagctcaagaaagcgcag gaactcggcgttgcaattctgaccgaagacgaatggctgaaaatggtcggctga

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