Vallitalea guaymasensis: HYG85_00360
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Entry
HYG85_00360 CDS
T07172
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vgu
Vallitalea guaymasensis
Pathway
vgu03030
DNA replication
vgu03410
Base excision repair
vgu03420
Nucleotide excision repair
vgu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vgu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HYG85_00360 (ligA)
03410 Base excision repair
HYG85_00360 (ligA)
03420 Nucleotide excision repair
HYG85_00360 (ligA)
03430 Mismatch repair
HYG85_00360 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vgu03032
]
HYG85_00360 (ligA)
03400 DNA repair and recombination proteins [BR:
vgu03400
]
HYG85_00360 (ligA)
Enzymes [BR:
vgu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HYG85_00360 (ligA)
DNA replication proteins [BR:
vgu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HYG85_00360 (ligA)
DNA repair and recombination proteins [BR:
vgu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HYG85_00360 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HYG85_00360 (ligA)
MMR (mismatch excision repair)
DNA ligase
HYG85_00360 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HYG85_00360 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
BRCT_2
PTCB-BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
DUF8054_C
Zn_ribbon_LysW
Zn_ribbon_DUF2089
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
QUH27453
UniProt:
A0A8J8M756
LinkDB
All DBs
Position
complement(74700..76664)
Genome browser
AA seq
654 aa
AA seq
DB search
MNELNRMKELVQLLNRAGEEYYQKNNEIMSNYEYDNLYDELIELEKETGITMSDSPTNKV
GYTLLSSLPKEKHKTRMLSLDKTKEISALKEWIGDKKGMLSWKLDGLTIVLTYNEGKLVK
AVTRGNGEVGEVITNNAKVFKNIPLHISYKDELIIRGEAVIKYSDFKIINERIVDKDKYK
NPRNLCSGTVRQLNNEITAKRNVHFFAFTLVQADDVDFSDSKINQLEWLQSLGFDTVEYS
IVYKDNIEDEIKNFEDKIQHNDFGSDGLVLTFDSISYSRSLGQTAKFPRHSIAFKWSDEV
KDTKLLYIEWSASRTGAINPIAVFEPIELEGTTVKRASLHNLSILEQLQLIKGDTIEVYK
ANMIIPQVANNLSKENTDDQTSREVLIPSKCPVCGGEVEVKQVNDVKVLYCINEECQAKK
IKAFTHFVARDAMNIEGLSESTIQKFIDKGFIKTFADIYRIEKYKDEIIALEGFGEKSYI
NLIKSIEKSKEVLLPNFIYALGIINVGLSNAKLICKHYDYDLDKILSASEEELTLIEGYG
SIIAKSFVMYFSDEKNMEAINDLLDYVIIQKIESTNNNILEGKTFVITGSLTIYANRKEL
KELIESLGGKVTGSVTGNTDYLINNNVESSSSKNKKAKELGVPIIDEETFQSLL
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaattaaatagaatgaaagaattggttcagctgttaaatagagcaggtgaagaa
tattatcaaaaaaataatgaaatcatgagtaattatgagtatgataatctgtatgatgaa
ttgattgagctagaaaaagagacaggaataacaatgagtgatagtcctactaataaggtt
ggatatactcttttaagctccttgccaaaagaaaagcataaaaccagaatgttatcccta
gacaagacaaaggaaatatcagcattgaaagaatggataggcgataaaaaagggatgcta
tcatggaaattagatggtttgacaattgtcttgacatataacgaaggtaagttggttaaa
gcggtcacaagaggaaatggtgaggttggagaggttattactaataacgctaaagttttt
aaaaacattcctctccatatttcatacaaagatgaactaattattagaggagaagcggta
atcaagtattcagatttcaaaatcattaatgaacgtattgttgataaagacaaatataag
aatcctagaaatctatgtagtggtacggtaagacagcttaataatgaaataacagctaag
agaaatgtacatttttttgcttttactttggttcaagcagatgatgttgattttagtgat
tcaaaaatcaatcagttggaatggttacaatctcttggtttcgatacagtagagtatagt
attgtttataaagataatattgaggatgaaatcaaaaattttgaagataaaatacagcac
aatgattttggttcagatggtttggtactaacttttgattctatttcttattctaggagt
ctaggacaaacagcaaaattccctagacattcaatagcattcaagtggagtgacgaagta
aaagatactaagctattatatatagaatggagtgcttctagaactggagctattaatcct
attgctgtctttgaacctatagagcttgagggaaccactgtgaaaagggcgagccttcat
aatctaagtatactagagcagcttcagttaattaaaggtgataccattgaagtatacaaa
gccaatatgattataccacaagttgctaataatctgtccaaagaaaatactgatgaccaa
acctcaagagaagttttgattcctagcaaatgtccagtctgtggtggcgaagttgaagta
aaacaagttaatgatgtcaaagttctatattgtattaatgaggagtgtcaagccaagaaa
ataaaagcatttacacattttgttgctagagatgctatgaatattgaaggtttatcagaa
tctacaatacaaaaattcattgataaaggttttattaaaacttttgcagatatctacagg
attgaaaaatataaagatgagataatagcgttggaaggatttggagagaagtcttatatt
aatctcatcaaatccatagaaaaaagtaaagaggtattacttcctaatttcatttatgca
ctaggaataattaatgtaggattaagtaatgcaaagttgatttgtaaacattatgattat
gatcttgataaaatattatcagcatcagaagaagagttaacacttattgaagggtacgga
agtattattgccaagtcttttgtcatgtatttcagtgatgaaaagaatatggaagcaatt
aatgatttgcttgattatgttatcattcaaaaaatagaaagtaccaataataacattttg
gaaggaaagacttttgttattactggaagtttaactatatatgcaaatagaaaagaatta
aaggaattgattgagagcttaggtggaaaagtaacaggaagtgttactggcaatacagat
tatcttatcaataataacgtggaatcatcatcttcaaaaaataagaaagcaaaagagttg
ggtgtaccaattatagatgaagaaacctttcaatccctattataa
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