Virgibacillus halodenitrificans: BME96_02835
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Entry
BME96_02835 CDS
T04548
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vhl
Virgibacillus halodenitrificans
Pathway
vhl03030
DNA replication
vhl03410
Base excision repair
vhl03420
Nucleotide excision repair
vhl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vhl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BME96_02835 (ligA)
03410 Base excision repair
BME96_02835 (ligA)
03420 Nucleotide excision repair
BME96_02835 (ligA)
03430 Mismatch repair
BME96_02835 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vhl03032
]
BME96_02835 (ligA)
03400 DNA repair and recombination proteins [BR:
vhl03400
]
BME96_02835 (ligA)
Enzymes [BR:
vhl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BME96_02835 (ligA)
DNA replication proteins [BR:
vhl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BME96_02835 (ligA)
DNA repair and recombination proteins [BR:
vhl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BME96_02835 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BME96_02835 (ligA)
MMR (mismatch excision repair)
DNA ligase
BME96_02835 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BME96_02835 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
RNA_pol_A_CTD
RNA_ligase
Zn_ribbon_NUD
5_3_exonuc
HHH_3
E1-E2_ATPase
Motif
Other DBs
NCBI-ProteinID:
APC47179
UniProt:
A0AAC9IXL1
LinkDB
All DBs
Position
540779..542782
Genome browser
AA seq
667 aa
AA seq
DB search
MEEQQAQKQIEALREILNQYSYEYHVLDKPSVPDSEYDQKLQELIKLEEAHPQLVTPDSP
TQRVGGDPLEGFQKVEHRIPMLSLGNAFNETDLRDFARRATQHMEEPVTFVCELKIDGLA
VSLTYENGKFVRGATRGDGTIGEDITSNLRTIRSIPLTIKEKETIEVRGEAFMPHKSFLA
LNKAKEENEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFLYGVGEWATSSLQTHSERLD
KLKELGFKTNPEWRRCESIEEVLEYVDYWTNERPNLNYEIDGIVIKVDNLEQQEELGYTA
KSPRWAIAYKFPAEEVMTKLVDIELSVGRTGVVTPTALLEPVKVAGTTVQRASLHNEDLI
RAKDIRIGDMVVIKKAGDIIPEVVRIVEEKRTGDEKEFYMPEACPACGSELVRLEEEVAL
RCINPNCPAQLKEGLIHFVSRNAMNIDGLGEKVIIQLFQEKLIHTMADLYRLKEEDLLQL
ERMGEKSVSNLLNAIETSKSNSLERLLFGLGIRFIGAKAAKTLAAEFGTMEKLQNASFED
LVAIDEIGDKMADSIVQYFEEQKVIDLLKDLRSLGVNMEYKGPKQATQSGEGIFAGKTIV
LTGKMEQFTRSEAKELIEAQGGTVTGSVSKKTDFLIAGEDAGSKYDKAEKLGITIWNEQQ
LKEAMED
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggaggaacaacaagcgcaaaaacaaattgaagcactacgggaaatattaaatcaatat
agctatgaatatcatgtgttggataaaccatctgtaccagattcagaatacgaccagaag
cttcaggagcttatcaagctagaggaggcgcatccacagctagttacacctgactcccca
acccaacgtgtgggaggagaccctttggaaggctttcaaaaggtagagcaccgtattcct
atgttgagccttggcaatgcgtttaacgaaacggatctccgtgactttgcaagacgcgca
acacagcacatggaggagccggtaacctttgtctgtgaattaaaaattgatggacttgct
gtatctttaacatatgagaacggaaagtttgtcagaggagcaacacgtggtgacggaacg
atcggagaagatataacgagtaatctgcgtacaattcggagtatccctcttacgataaaa
gaaaaagaaacgattgaggttcgtggggaagcatttatgccacataagtccttcctcgct
ttgaacaaggcaaaagaggaaaatgaggaggagccatttgctaatcctcgtaatgctgcg
gcaggatctttaagacagcttgatcctaaaattgccgcaaaacggaatttggatatcttc
ctatacggagtcggagaatgggcgacaagttcccttcaaacacatagtgagcggctggat
aaattgaaagagctcggttttaaaacaaatcctgagtggcgtcgatgtgaaagcatagag
gaagtgcttgaatatgtcgactattggacaaatgagcgacctaatttaaattatgaaatt
gatggaatcgttattaaagtagataatctggaacagcaggaggaacttgggtatacagca
aagagtccaagatgggctattgcatacaaatttcctgccgaagaagtgatgacaaagctt
gtcgatattgaattaagtgtagggcgtactggtgtagttacaccgactgctttactggaa
ccggtaaaggttgccggtactactgttcagcgcgcatccttgcacaatgaagatttaatt
cgagcgaaggatattcgcattggggatatggtagtaattaaaaaggctggcgacatcatc
ccggaagtagtacgtattgtggaagagaaaagaactggagatgaaaaagaattttatatg
ccggaggcttgcccagcttgtggaagtgagctagtgcggttggaagaagaagtagcactt
cgttgtattaatcctaattgcccggcacagctgaaagaagggctgatccatttcgtttcc
cgtaatgccatgaatattgatggcttgggagaaaaggtaattatacagcttttccaggaa
aaactaatccatacgatggcagacctttaccgattaaaggaagaggatttactgcaattg
gagcgaatgggtgagaaatccgtttctaacctattgaacgcaattgagacatccaaaagt
aattcgctggaaagactgttatttggcttagggattcgatttattggcgcaaaggctgcc
aagacacttgcagcagaatttggtacaatggaaaagcttcagaatgcttcctttgaagat
ctcgttgctattgatgagattggggataaaatggctgattccattgtgcaatattttgaa
gagcaaaaggttattgatttattgaaggatcttcgttcacttggtgtgaatatggagtac
aaagggccgaaacaagcaacacaatcaggagaaggtatttttgcaggaaagaccattgta
cttacaggcaaaatggagcaattcacccgttcagaagccaaggagttaattgaagcacaa
ggtggtactgtaacaggcagtgtcagtaaaaaaacagattttcttattgctggggaagat
gctggatccaaatatgataaagccgaaaaactcggaataacaatttggaatgaacaacag
ctgaaagaagcaatggaggattaa
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