Vibrio sp. HB236076: AB0763_09575
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Entry
AB0763_09575 CDS
T10847
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vih Vibrio sp. HB236076
Pathway
vih03030
DNA replication
vih03410
Base excision repair
vih03420
Nucleotide excision repair
vih03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AB0763_09575 (ligA)
03410 Base excision repair
AB0763_09575 (ligA)
03420 Nucleotide excision repair
AB0763_09575 (ligA)
03430 Mismatch repair
AB0763_09575 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vih03032
]
AB0763_09575 (ligA)
03400 DNA repair and recombination proteins [BR:
vih03400
]
AB0763_09575 (ligA)
Enzymes [BR:
vih01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AB0763_09575 (ligA)
DNA replication proteins [BR:
vih03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AB0763_09575 (ligA)
DNA repair and recombination proteins [BR:
vih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AB0763_09575 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AB0763_09575 (ligA)
MMR (mismatch excision repair)
DNA ligase
AB0763_09575 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AB0763_09575 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
HHH_3
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
XDK24465
UniProt:
A0AB39HEI5
LinkDB
All DBs
Position
1:complement(2205561..2207576)
Genome browser
AA seq
671 aa
AA seq
DB search
MSQALQSRLEFLKQQLQYHAIRYYVEDSPEIPDVEYDTMMRELLDIEANHPQWVTADSPS
QRVGAQALSSFGQVEHELPMLSLDNAFNDQELEAFERRALERLSNKAVLSYCCEPKLDGL
AVSLLYENGVLVQAATRGDGTTGENITENVRTIKSIPLRLRGEGYPTRLEVRGEVFMPKA
GFERLNEQARQKGEKVFVNPRNAAAGSLRQLDSKITATRPLSFYAYSVGVVEGGTLADSH
FQRFNQLKAWGLPVGAQVKHVDSMAAVKAYHQEILAARESLAYEIDGVVFKIDDIAIQQQ
LGFVARAPRWAIAYKFPAQEETTRLRDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLH
NADEIQRLGVKIGDSVMIRRAGDVIPQVVSVVHDRRPDDARDITFPTQCPVCGSNVERID
GEAVARCSGGLVCSAQRKEALKHFVSRKAMDVDGLGDKVIEQLVEREMVQTPADLFSLSA
GVITVLERMGPKSAQNIVNALSVAKQTTLPRFLYALGIREVGEATASNLANHFQELERIR
TATIEQLVEVQDIGEIVATHIVKFFSEPQNQQVIEDLLAQGIHWPNIQTAETDKPKPLDG
KTVVLTGTLTQLSRSDAKTALQDLGAKVTGSVSKKTDMLFAGEAAGSKLTKAQDLGISIK
TEQDLLDMIKA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaagcattacaatcgcgcctagaatttttaaaacagcaacttcagtatcacgcc
attcgttattacgttgaagacagcccggaaatccccgatgttgagtacgataccatgatg
cgtgaattactcgatattgaggccaatcatcctcagtgggtcaccgctgattctccgagc
caacgagtgggcgctcaagcgctgtccagttttggtcaagttgagcatgagcttccaatg
ctgtctttagataatgcgtttaatgatcaagagcttgaggcttttgagcgccgtgctctt
gaacgtttgtctaataaagcggtgttgagttattgctgcgagcctaagctggatggactc
gcggtgagtctcttgtatgaaaatggcgttttggttcaagccgcgacccggggtgacggt
acgacaggggagaacattacagaaaatgttcgcacgattaaatcgattccattgcgcctg
cgcggtgagggctatccgacccgattagaagttcgcggtgaagtattcatgcccaaagcg
gggtttgaacgtttaaacgagcaggctcgtcaaaaaggtgaaaaagtctttgttaaccca
agaaatgccgccgccggtagcctgcgacaactcgattccaaaattaccgcgacgcgaccg
ttaagtttttatgcttacagtgtgggcgtggtcgaaggaggcacgcttgctgacagtcac
tttcagcgttttaatcagctcaaagcgtgggggctgccggttggcgcacaagtaaaacac
gttgattcgatggcggcggttaaggcttatcaccaagagatcttggcggccagagagtcc
ttggcctacgaaattgacggagtcgtatttaaaattgacgacattgcgattcaacagcaa
ttggggtttgtcgcccgagcaccgcgttgggctatcgcctataagtttccggcacaagaa
gaaacaacacgactaagagatgtggagtttcaggttggccgaaccggagcgattacccca
gttgcgaagctagagccggtgttcgttggcggggtaaccgtcagtaatgcgacactgcac
aacgccgatgaaatacaacgcctcggagtaaaaataggtgatagtgtgatgattcgccgt
gctggtgatgtgataccacaggtggtgtcggtggtgcatgatcgccgcccagacgatgct
cgtgatattacttttcctacccaatgcccagtgtgtggttccaatgtcgagcgcattgac
ggtgaggctgtggcgcgatgcagtggtggtttagtgtgttcagcacagcgcaaagaagcg
cttaagcactttgtttctcgtaaggcgatggacgtagatggcttgggggataaagtgatt
gagcagctcgtcgaacgtgaaatggtacaaacgccagctgatcttttctctctctctgcc
ggcgtgatcacggtcttggagcgaatgggacccaaatcagcacaaaacattgtcaatgcc
ttgagtgtggctaagcaaaccactttgcctcgctttttatacgccttgggcatccgagag
gttggggaagcgacggcatcaaacttggctaatcactttcaagagttagagcgtattcgt
acggcaaccattgagcaacttgttgaagttcaagacattggtgaaatagttgcgacccat
attgtcaagtttttctctgagccacaaaaccaacaagtgatcgaagatttgttagcccaa
gggatccattggcctaatattcaaacggcagaaacggacaaaccgaagccacttgatggt
aagacggtggtgttaacgggaactctgacccagctttctcgctctgatgcgaaaacggca
ttgcaagacttaggcgctaaagtgaccggcagcgtgtcaaagaaaaccgacatgttgttt
gcaggtgaggccgcaggctctaagcttaccaaagcgcaagacttggggatcagcattaaa
actgaacaagatctgctcgacatgattaaggcttaa
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integrated database retrieval system
