Viridibacillus arvi: JNUCC6_12140
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Entry
JNUCC6_12140 CDS
T06874
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vij
Viridibacillus arvi
Pathway
vij03030
DNA replication
vij03410
Base excision repair
vij03420
Nucleotide excision repair
vij03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vij00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JNUCC6_12140 (ligA)
03410 Base excision repair
JNUCC6_12140 (ligA)
03420 Nucleotide excision repair
JNUCC6_12140 (ligA)
03430 Mismatch repair
JNUCC6_12140 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vij03032
]
JNUCC6_12140 (ligA)
03400 DNA repair and recombination proteins [BR:
vij03400
]
JNUCC6_12140 (ligA)
Enzymes [BR:
vij01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JNUCC6_12140 (ligA)
DNA replication proteins [BR:
vij03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JNUCC6_12140 (ligA)
DNA repair and recombination proteins [BR:
vij03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JNUCC6_12140 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JNUCC6_12140 (ligA)
MMR (mismatch excision repair)
DNA ligase
JNUCC6_12140 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JNUCC6_12140 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
5_3_exonuc
BRCT_2
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
QOV09417
UniProt:
A0A7M2QPD7
LinkDB
All DBs
Position
complement(2448825..2450831)
Genome browser
AA seq
668 aa
AA seq
DB search
MDKIQLEKRVAELNELLHEYGHAYYVLDKPVVSDAIYDQLLNELITIEQENPDLIYPDSP
TQRVGGDILQGFKKVTHDYPMLSLSNAFNEADLNDFDRRARAIIGDNFNYICELKIDGLA
ISLRYENGVFVVGSTRGDGQIGEDITENLKTVRSIPLRLKEPVSIEARGECYMPKRSFTN
LNKARAEKGEELFANPRNAAAGSLRQLDPKIAASRNLSTFIYAIGGSGEAYNLDSHSEAL
DYMDKLGFHTNHERRACKDIKEVMAYIEEWTEKRPELPYEIDGIVIKVNRYDQQEELGYT
AKSPRWSIAYKFPAEEVVTKVLDVDLTVGRTGVVTPTAILEPVLVAGTTVGRATLHNEDI
IREKDIRIGDQVIIRKAGDIIPEVVSVLFDQRSEDSVPYEMPTHCPACDSELIRLEGEVA
LRCVNPQCFAQISEGMAHFVSRNAMNIDGCGEKVVEQLLKSDLVKDVSDLYKLNVEELIQ
LDRMGEKSANNLVTAIENSKENSMERLLFGLGIRHVGAKAARVLSEEFGSMQNLMKATTN
ELVNVNDIGEKMAESLLSYFENEEVQALLQRLSDAGVNMDFKGKKVNVADIESIFSGKTV
VLTGKLEQLTRQDAKEKIEQLGGTVTGSVSKKTDLVIAGEEAGSKLAKAEQLGIEVWDEN
RLLQELTV
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacaaaatacaactggaaaagcgtgtagctgaactaaatgagcttcttcatgaatat
ggacatgcctattatgtactggataaaccggttgtttcagatgcaatttacgatcaatta
ttaaatgaactcattacaattgaacaagaaaatccggatttaatatatccagattctcct
acacaacgagtaggtggggacatactacaaggattcaaaaaggttacacatgactatcca
atgcttagcctttcaaatgcttttaacgaagcagatttgaatgactttgatcgaagagca
cgtgctattattggtgacaattttaattatatttgtgaattgaaaatcgatggtttagcg
atttctcttcgctacgaaaatggtgtttttgttgtaggttcaacacgtggtgatggtcaa
ataggtgaggatattacagaaaacttaaaaacggttcgttctataccgttacgtttaaaa
gagccggtatccattgaagcgcgtggagaatgttatatgccaaaacgctctttcacaaat
cttaataaagcacgtgcagaaaaaggcgaggagttatttgcaaaccctcgtaatgcagcg
gctggatcgcttcgtcaactagaccctaaaattgctgcgagtcgtaatttatcgactttc
atttatgctataggaggtagtggtgaggcttacaatttagacagccatagtgaagcatta
gattatatggataaattagggtttcatacaaatcatgaacgcagagcatgcaaggatatt
aaagaagtaatggcttatatcgaagagtggacagaaaaacgcccagaattaccatatgaa
attgatggaatcgtcattaaagtaaaccgttatgaccagcaagaagagttaggttataca
gcgaaaagtccacgttggtctatcgcatataaattccccgctgaagaggtggtcactaag
gttttagatgttgatttaactgttggtcgtacaggtgttgttacccctacagcaatatta
gaaccagttcttgtagcagggacaactgttggacgtgcaacactgcataatgaagacatt
attcgtgaaaaggatattcgaatcggagaccaagttattatccgtaaagccggtgatatc
atccctgaagttgtttccgtattgtttgatcaacggagtgaagattctgttccttatgaa
atgccaacacattgtccagcttgtgatagtgagctcattcgtttagaaggtgaagtagca
cttcgctgtgtaaatccacaatgtttcgctcaaatttcggaaggtatggctcattttgta
tcacgaaatgccatgaatatcgatggttgtggagagaaagttgtagagcaattattaaaa
tctgatcttgtaaaagatgtatcagacctatataaattaaatgtagaagaactaattcaa
ttagatcgtatgggcgaaaaatcagcaaataatttagtgacagcaattgaaaattcaaaa
gaaaattcaatggagcgcttattatttggtttaggtattcgccatgttggtgcaaaagca
gcacgcgtattatctgaagaatttggttctatgcagaatttaatgaaggctactacaaac
gaacttgtgaatgtaaatgatattggtgaaaaaatggccgaatcattgctttcatatttt
gaaaatgaagaagtacaagcattactacaaaggctttctgatgcaggtgtgaacatggac
tttaaaggtaaaaaagtaaatgtggctgacatagagagtatattttcaggaaagacagtt
gttttaaccggtaaattagaacaattgacacgacaagatgcaaaagagaaaatagaacag
ttaggcggtacagttactggaagtgtaagtaaaaaaacagatctagtaatcgccggagaa
gaagcaggctcgaaactagcaaaagctgaacaactgggcattgaagtttgggatgaaaac
cgccttcttcaagaattaactgtgtaa
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