Virgibacillus salidurans: KFZ58_00430
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Entry
KFZ58_00430 CDS
T08697
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vik
Virgibacillus salidurans
Pathway
vik03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vik00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KFZ58_00430 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vik03400
]
KFZ58_00430 (mfd)
Enzymes [BR:
vik01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KFZ58_00430 (mfd)
DNA repair and recombination proteins [BR:
vik03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KFZ58_00430 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
UB2H
IstB_IS21
DUF3638
Motif
Other DBs
NCBI-ProteinID:
UJL46488
LinkDB
All DBs
Position
78369..81893
Genome browser
AA seq
1174 aa
AA seq
DB search
MKGIHNYLQSKEDIQSILGGVTSGMSEQLVAGLSGSARSLLVSLINESADKPILLVTHQL
VQAQQLYDDLAEFAGEDDVHLYPVNELIASEIAIASPELRSQRIDSLTAWSKRESGILIA
PVAALKRILPPPSYWSTYQLRFALGEAIDIEAYLSSLVDMGYARQGMVTTPGEFSVRGGI
IDIYPITEEYPIRIELFDDEIDSIRYFDAETQRSLDKQQEVIVGPATELLLTDEDILSSA
GRLENALADSLGKMTDVEAKETLSENMEQDIARLKNVEHFQEMYKYIGFLYENPASLLDY
LPSNGLIIFDEMNRIQETATNLDTEEAEWYSSLLESNKMVRNSTFSFDWQSVWDNISHQR
LYMSVFLRHIPNTQPQNIINLSSRVMQEFHGQMNLFKNELKRWEKGDYSVVILAPNKKRA
DKINSIFMDYDIEAAVTETPQLPVGIPTIAIGNISSGIEFPMHKLALITENELFKKRTKK
PRRQQKVSNAERIQNYQELKVGDYVVHANHGVGKYLGIETLEVKDSHKDYMLIKYSGDDK
LFVPIDQIDLVQKFVASEGKEPKLYKLGGSEWAKVKRKVQSSVEDIADDLIKLYAERQEK
QGYAFSEDSEMQREFEASFPYQETDDQIRCIEEIKQDMERERPMDRLLCGDVGYGKTEVA
IRAAFKAIADGKQVALLVPTTILGQQHFETIQERFQDHAVNIALLTRFRTKKQQTETLKG
LKSGNVDIVIGTHRLLSKDVQYRDLGLLIVDEEQRFGVKHKEKIKQLKTNVDVLTLTATP
IPRTLHMSMLGVRDLSVIETPPENRFPIQTYVMEYNPIFIRESIERELARGGQVFFLHNR
VESIDKVARDVNMLVPDARVAVAHGQMNEAELENAMFGFLEGESDILVSTTIIETGVDIP
NVNTLIVNNADYMGLSQLYQLRGRVGRSNRVAYAYFTYQKDKVLTEVSEKRLQAIKEFTE
LGSGFKIAMRDLSIRGTGNLLGAQQHGFIDSVGFDLYSQMLKDAIEARKAGKEVEDIQPF
EPELTLDVDAYIPESYIKDEKQKIEIYKQFQAIESSEDIDDLKDELIDRFGDFPPEVEHL
FAVASLKMYAKRERVESISEKNKKIELLVDENRSQQIDGAKLFELASSFGRGVQLGTENS
KLKIIFKYTGDSRHGRYGTVENLVDKLQAVDREQ
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtattcataattatttacaatcaaaagaagatatacaatcaattttaggtggg
gttaccagtggtatgagcgaacagcttgttgcgggcttatctggatctgcaagaagtctg
cttgtttcactgattaatgaatctgcagataagccaattttgctggtaacacatcaatta
gtacaggcgcaacagctatacgacgatttagctgaatttgccggggaagatgatgtccat
ttataccctgtgaatgaactgatcgcttctgaaattgccattgccagtccggaactcagg
agtcaacggatcgattcattaacagcctggtcgaaaagggaatcaggtattttaatcgcg
cctgtagctgcattaaaacggatattaccaccaccaagctactggagcacataccaatta
agatttgcgcttggagaggcgattgatattgaggcgtacctgtcatcattagtagatatg
ggatacgcgcgtcagggaatggttacaacacccggcgaatttagtgttcgtggcggaatc
attgatatttatccgataacagaggaatacccgatacgtatagaattgtttgatgatgaa
atagattctatacggtattttgatgcggaaacacagcgctcattggacaaacagcaggaa
gtcattgtcgggccggcgacagaactactactgacagacgaagatattctttcaagcgca
gggagactcgagaatgcattggcagacagtttaggtaaaatgacagatgtagaagcaaaa
gaaacattatccgaaaacatggaacaggatatcgcacgcctgaagaatgtggagcatttt
caagaaatgtataaatatattggattcctctatgaaaatcctgctagtttgttagactac
ctcccttccaatgggttgattattttcgatgaaatgaacagaatacaggaaacagctacg
aacctggatacggaagaagccgagtggtacagcagtctactcgaatcaaataaaatggta
agaaatagtacattttcctttgattggcaatcggtatgggacaatatcagtcaccaacgg
ctgtatatgtctgtattcttgcggcatattccaaatacacaaccgcaaaatattatcaac
ctttcttctcgggtcatgcaggaattccatggccaaatgaatttgtttaaaaacgagtta
aagcggtgggaaaaaggggattactctgttgtcattttagccccaaataaaaaacgcgcg
gataaaatcaattctattttcatggattatgatattgaagcagcagtcacagaaaccccg
caactgcctgtagggattcctacgatagctatcggtaatatcagcagtggtatagaattc
ccgatgcataaactggcactgataacggaaaatgaactgttcaaaaaacgaactaagaag
ccgagaaggcagcagaaagtatctaatgctgaacggattcagaattatcaggaactaaaa
gtgggggactacgttgtacatgcaaaccatggtgtaggtaaatatttagggattgaaacg
ctggaagttaaggattcacataaagattatatgctgatcaagtattccggcgatgataag
cttttcgttccgatcgatcaaattgatctcgttcagaaatttgtagcttccgagggtaaa
gaaccgaagttgtacaaattaggtggatcagaatgggcgaaggtgaagcgaaaagtacag
tcatctgttgaagacattgcggatgatttaattaagctatacgccgaaagacaagaaaaa
caggggtatgccttttccgaagacagcgagatgcagcgtgaattcgaagcttcgtttccg
tatcaggaaaccgatgaccagattcgctgtattgaagaaattaagcaagatatggaaaga
gaacgcccgatggatcgactgctttgtggggatgttggttacgggaaaacagaggtggcg
atacgtgctgcgtttaaagctatagcggatggaaagcaagtcgctcttttagtaccgaca
actatcttaggccaacagcattttgaaacgattcaagagcgcttccaggatcatgcggtc
aacatcgccctcttaacacgctttcgaacgaagaaacaacagacggaaacattaaaaggg
ttaaaatcaggaaatgttgatatcgttattggtacccatcgcttattatccaaagacgtg
cagtatcgtgatttaggactgcttattgttgacgaagaacagcgctttggtgtgaagcat
aaggaaaaaattaaacaattgaagaccaatgtggatgtgctcaccttaacagcaacccca
attccaagaaccttgcacatgtccatgctcggggtacgtgacttatctgtcattgagaca
ccacctgaaaatcgttttccgattcagacctatgtgatggaatacaaccctattttcatc
cgtgaatcgattgagcgggaattggcacgcggcggccaagtattcttcctgcacaatcgg
gtggaaagtattgataaggttgctagggatgtcaatatgctcgttccggatgccagagta
gcggtcgcacatggacagatgaatgaggctgaactggaaaacgctatgtttgggttttta
gaaggtgaatctgatatattggttagcacaaccattatcgaaacaggtgtcgatattcca
aatgtgaatacactaatcgtgaataatgcagattatatggggctgagtcagctttatcag
ctgcgtggccgtgtggggcgttccaatcgcgtcgcatatgcgtactttacctatcaaaaa
gataaagtactcacagaggtatctgaaaagcgtctgcaagccattaaggaatttacggag
ttaggttccggctttaaaattgcgatgcgtgatctgtccattcgtggaaccgggaactta
ctgggagcccagcagcatggatttatcgactctgtcgggtttgatttgtattcacaaatg
ctcaaagatgccatcgaagctcgtaaagccgggaaagaggtggaagacatacaacccttt
gaacctgagctcacattggatgtggatgcttatatcccggaatcctatattaaagacgag
aaacagaaaattgaaatctataaacaatttcaagccattgaatcttcggaggatattgat
gatctaaaggatgaattaatcgatcggttcggcgatttcccgccggaagtggagcattta
tttgccgtagcttccttgaaaatgtatgccaaacgagaacgtgtcgaatccattagtgaa
aagaataaaaaaatcgagctgcttgtggatgaaaatcgaagtcagcaaatcgacggagca
aaattattcgagcttgccagtagctttggacgaggtgtgcaattagggacagagaatagt
aaattgaaaataatctttaaatatacgggtgattcccgccacgggcgctacgggaccgta
gaaaatctggttgataagttgcaagcagtggatagagaacaataa
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