Virgibacillus salidurans: KFZ58_00780
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Entry
KFZ58_00780 CDS
T08697
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vik
Virgibacillus salidurans
Pathway
vik03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vik00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KFZ58_00780 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vik03021
]
KFZ58_00780 (rpoC)
03400 DNA repair and recombination proteins [BR:
vik03400
]
KFZ58_00780 (rpoC)
Enzymes [BR:
vik01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KFZ58_00780 (rpoC)
Transcription machinery [BR:
vik03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KFZ58_00780 (rpoC)
DNA repair and recombination proteins [BR:
vik03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KFZ58_00780 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
UJL46537
LinkDB
All DBs
Position
146633..150241
Genome browser
AA seq
1202 aa
AA seq
DB search
MLDVNNFEYMKIGLASSEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTKSKVRRERMGHLELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFAAYIVTDAGDTPLEKKQLLSEKEYRSYYDKYGKSFKAQMGAEAIRKLLQ
DIDLEKEVEALREELKTAHGQRRTRAIKRLEVIESFRHSGNDTSWMVLDVLPVIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMYQVGLPRE
MALELFKPFVMRELVSKGIAHNIKSAKRKVERVHPDVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARVLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTMERENAVGEGSVFKDLNEALLSYQNGYVHLHTRIAVE
AASVNNKFTESQHDQLLLTTVGKLIFNEILPESFPYINEPTQSNLEIETPGKYFVDSGTN
IQEEIKNRDIIDPFKKGILGDIIAEVFKRFKISETSKMLDRMKDLGFYYSTKAGMTVGIS
DIVVLSEKGEILDNAQSKVDNVSKQFRRGLITDEERYDRVIAVWSQAKDTIQNKLMYSLS
NRNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGEIIELPIKSSFREGLTVLEYFISTH
GARKGLADTALKTADSGYLTRRLVDVAQDVIVREAECGTDRGLTVSTLSDGAELIEPLYD
RLVGRTLFQTVKHPETGDVIVEKEEVMNEDQAKQIVDAGVEHVTIRSAFTCNTKHGVCQR
CYGRNLATGDEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELFE
ARNPKGQAVITEVHGTIEEIKEVKDKQEIIVQGDVEQRAYPVPYNARMKVSVGDEVEAGA
PLTEGSIDPKDLLRIQGVEGVQDYLLREVQRVYRMQGVEIGDKHVEVMVRQMLRKIRVIE
SGDTTELPGALLELHQFRDANHTVLNEGQQPATGKPVLLGITKASLETDSFLSAASFQET
TRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGINRYRNVRPSTDEVEEDVEEVEESET
VQ
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
ttgctagatgtaaataactttgagtatatgaagatcggtttagcttcatcagagaagatt
cgctcgtggtcatacggcgaggtgaaaaaaccagaaacgattaattatcggacgttgaaa
ccggaaaaagacggtttgttttgtgaacgaattttcggtccgcaaaaagactgggaatgt
cattgcggaaagtataaacgtgtacgatacaaaggtgttgtctgtgatcgttgtggtgtt
gaagtgacgaaatcaaaagttcgtcgtgaacgtatgggacacctcgaattagctgcccct
gtatcacatatttggtattttaaaggtatcccaagtcgtatgggacttgtattagacatg
tcaccaagggctttggaagaggttatctattttgccgcatatattgttacagacgccgga
gatacacctttagagaaaaaacaactattatctgagaaagaatatcgctcctattatgat
aaatatggtaaatcatttaaagcgcaaatgggtgccgaagcaatccgtaaacttctgcag
gatatcgatcttgaaaaggaagttgaggctttaagagaagaactaaaaacagcgcacggt
caacgtaggacgcgtgccattaaacggttggaagtaatcgagtcatttcgtcattcagga
aacgatacatcttggatggtattagacgtcttgcctgttatcccaccggaaatacgcccg
atggtacaacttgatggaggacgttttgctacatccgatctaaacgatttatatcgccgt
gttattaatcgtaataatcgcttgaagcgtttattggatcttggggcaccaagtattatc
gttcaaaatgaaaaacgtatgcttcaggaagcggtggatgccttaattgataatggtcgc
cgtggccgtccggttacaggtcctgggaacagaccgctaaaatccctgtctcatatgcta
aaagggaaacaaggccgtttccgtcaaaacttactagggaaacgtgttgactactccgga
cgttcggttatcgtagttggtccgagtttgaagatgtatcaagtaggtctgcctagagag
atggcactggaactgtttaaacctttcgttatgagagagctagtatcaaaaggaatcgcc
cataatattaaatcagcaaaacgcaaagtggaacgtgtgcatccggatgtatgggacgtc
ttggaggatgtaatcaaggagcaccctgtactgcttaaccgtgcaccaacattgcaccgt
ttaggtattcaggcatttgaacctatattagttgaagggcgtgcgattcgcttgcaccca
cttgtgtgtactgcatacaatgccgactttgatggtgaccaaatggcagtccatgttcct
ctgtcagcagaagcgcaggcagaagcgcgtgtgttaatgcttgcagcacaaaatatattg
aatccaaaagatggtaagcctgttgttacgccatcacaggatatggttttaggaaactat
tacttgacgatggaacgggaaaatgcggttggagaaggaagcgtctttaaagaccttaac
gaagcattgctttcttatcaaaatggttatgtacacttgcatacccggattgccgttgaa
gctgccagtgtaaacaataaatttacggagagtcagcatgatcaattgctgctgacaact
gtaggtaaacttatctttaatgaaattttacctgaatcgttcccgtatattaatgagcca
acacaaagcaatttggaaattgaaacacctgggaagtactttgtggacagcggaacaaac
attcaagaagaaattaaaaatcgcgatattatcgacccatttaaaaaaggtatattgggg
gatattattgcagaagtgtttaaacgattcaaaatcagtgagacatctaaaatgcttgac
cgtatgaaagaccttggtttctactattccaccaaggctggtatgactgtgggtatatca
gacattgttgtgttatctgaaaaaggggaaatccttgataatgcacaatctaaagtggat
aatgtttcaaaacaattccgtcgcgggttaattacggatgaagaacgttacgatcgagtg
attgcggtatggtcacaggcgaaagatacaattcaaaacaaattaatgtattcattaagt
aatagaaaccctattttcatgatgagtgattcaggtgcaaggggtaatgcatcgaacttc
acacagcttgcaggtatgcgtggcttaatggccaaccctgctggtgagatcattgaactg
ccaattaaatccagcttccgtgaagggttgactgttcttgaatactttatctcgacacac
ggtgcacgtaaagggctagcggatacagcacttaaaacagctgactccggctatttaaca
agacgcctcgtagacgtagcacaagatgttattgttcgcgaagcagaatgtggaacagac
cgtggtttgacagtatcaaccctgtcggatggagccgagcttatcgaaccattatacgat
cgattagtaggtcgtacgcttttccaaaccgtcaagcatcctgaaacaggagacgttatt
gtagaaaaagaagaagtaatgaacgaagaccaggcaaaacagattgtcgatgccggtgtt
gagcatgtaacgatacgatctgcatttacatgtaatacaaaacatggcgtctgccaaaga
tgttatggacgaaatcttgcaactggtgacgaggtagaagttggagaagcagtgggtatt
attgctgcacaatctatcggtgagcctggtacacagttaacaatgcgtacgttccacaca
ggcggagttgccggagacgatataacacaaggtcttccacgtatccaggaactgtttgag
gcacgtaatcctaaagggcaagccgttatcactgaagttcatggtacgatagaagaaatt
aaagaagtgaaagataaacaggaaattattgttcagggtgatgtagaacaacgtgcgtat
ccagtgccgtataatgctcgtatgaaggtttctgtcggtgatgaggtagaggcaggtgcc
ccacttacggaaggttctattgatccaaaagatctcctgcgtatacaaggcgtagaaggc
gttcaggactatctactacgtgaagtacagcgtgtatatcgtatgcaaggtgttgaaatt
ggcgacaaacacgttgaagtaatggtacgccaaatgctgcgtaaaatccgtgtgattgaa
tccggagatacgacagaacttccgggcgcattactggaattacaccagtttagggatgcg
aaccatacagttctaaacgaaggccagcaacccgcaaccggtaagcctgtcttgcttgga
attacgaaagcatctctggaaacagattcgttcttatctgcagcttctttccaagaaaca
accagagtgcttacagatgcggcaattaaaggtaaacgggatgaactgttaggccttaaa
gagaatgttattatcggtaaacttgttccagccggtacagggattaatcgataccgtaat
gtaaggccatctacggacgaagttgaagaagatgtagaagaagtcgaagaatctgagaca
gtgcaatag
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