Virgibacillus salidurans: KFZ58_06930
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Entry
KFZ58_06930 CDS
T08697
Symbol
addB
Name
(GenBank) helicase-exonuclease AddAB subunit AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
vik
Virgibacillus salidurans
Brite
KEGG Orthology (KO) [BR:
vik00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vik03400
]
KFZ58_06930 (addB)
Enzymes [BR:
vik01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KFZ58_06930 (addB)
DNA repair and recombination proteins [BR:
vik03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
KFZ58_06930 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD_C
DUF7658
Motif
Other DBs
NCBI-ProteinID:
UJL47594
LinkDB
All DBs
Position
1323514..1327005
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AA seq
1163 aa
AA seq
DB search
MGIRFLLGRAGTGKSGRSLDEIKEKLLDDPQGPKLFYIVPDQMTFQQEYALFNDKDIKGS
IRGQVVSFSRLAWRVLQETGGGTRQFISSVGIQMMLRKIIEERQGDWRVFQKAMEKQGFL
DQLENMITEFKRYEVTPDDLQTQIHQIKQYVHKEPGEEALAAKLEDLAYIYEKLIYALEG
NYIDSEDQLQLLTNKIQESTLLEDAEIYFDGFHRFTPKELTVVEALMKKCRRVTVTLTVD
HQQDTEVSELDLFYQTTETYHVLQEIARNNQINIEETVELDPANGRFKDRPYLAHLESNF
DVRPALTFDGEAPLNIAEAVHPRAEVEGAAQEIIRLVREENYRFQDIAVFIRETGTYHDL
IDTIFSDHDIPVFIDEKRTMLNHALIEFIRSALDVVEGNWRYDAVFRLLKTGFIPSSNPD
FPLTNDAIDELENYVLEYGIRSRSSWTGDKEWVFQRFRGFDQAAQTDSEKEIQQRINKYR
YQVARALKPFDEQIRNARTVQELCEITYTLLEDLDVPKRLEQTREIYDDRGEIEKGREQE
QVWNAVIQLFDEMVEIAGEESMTLSTLRTTLDAGFETLKFAHVPPTIDHVIVGTIDRSRI
SGIKCAFLLGVNDGVWPMKPAADGMINEQERELLAGHGMQLASSSKQQLLDDWFYMYIAF
TAAKDRIWVSYPLSDEEGKSKMPSQLIKRIEDLFPACCDHILLQDPDELAEADRFITTPL
KTRSALTAQLARIRKGYPVGPIWWNVLNWYMDHHPRFGTTHTILQSLYYQNKPINLSSET
VEELYPQQVKASVSRLESYYRCSYQHFAKYSLNLDERKIYKLDAPDIGQLFHEALRTITE
WIQADGKEFGQLSKKDTDVYAQKAVVNLAPILQHQILHSSNRYKYIQKKLQDVIARAAFV
LSEQARRSNFSPVGLELGFGKGQTLPPLTLGLENGYELMLRGRIDRVDKAVNEEDLFLRI
IDYKSSAKGLNLIEVYYGLALQMLAYLDVVLSNSEQWLGTRATPAGVLYFHVHNPMISKN
EKVNDEALEQEIFRKYKMQGMLLSDEEMVRQMDTSLESGSSQVVPAGVKKNGGFYSYSKI
ADYDTFTSLQNHIHQMMMQAGIDMTEGGVHLNPYQHKQEIACTYCPFHSLCQFDPILETN
NYRKLTDMKDEDILERLRKGEGK
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgggaatccgatttttgttgggaagagccggtacaggaaaaagcggcaggtcccttgat
gaaataaaagaaaaactgctggatgacccacaaggtcccaagcttttttatattgttcca
gatcaaatgacatttcagcaggaatatgccctgttcaatgataaggatataaagggaagc
atccgcgggcaagttgttagtttctccaggttggcatggcgggtactccaggaaaccggc
ggcggaaccaggcaattcattagctcggtcggtattcaaatgatgctcaggaaaattatt
gaggaaagacagggggactggcgcgtttttcaaaaggcgatggagaagcaaggattcctc
gatcaattggagaacatgattaccgaattcaaacgatatgaagtcacgccagacgatctc
caaacacaaatacaccaaataaagcagtatgtacataaagagcctggtgaagaggcatta
gctgcaaagttggaagatttagcttacatctatgaaaaattgatatacgcacttgaaggt
aattatattgactctgaagaccaattacagttactgacaaataagattcaggaatcaacg
ttactagaggatgcagaaatatattttgatgggtttcaccgatttactccgaaagagcta
acggtagtagaagcattaatgaaaaaatgcagacgtgtaacggttacgctgacagttgat
catcaacaagatacagaggtttccgaactggatctgttttatcaaacaacagaaacctat
catgtcctgcaggaaattgcccgtaacaaccaaattaatattgaagaaacagttgaattg
gatccagcgaacggcagattcaaggaccgaccgtatctggctcatttggaaagtaatttt
gatgtcagacctgcactaacttttgacggggaagcacccttgaatattgccgaggctgtt
catccccgcgcggaggtcgaaggagccgcacaggaaattatccgtctcgttcgtgaagag
aactatcgatttcaggacatcgctgtatttataagagagacaggtacataccatgatttg
attgatacgatatttagtgatcatgatatccctgtgtttattgatgaaaaacgaacgatg
ctcaatcatgcattaatcgaatttattcgttctgcattggatgttgtcgaagggaattgg
cgctatgatgctgtttttcgtctgttgaagaccggattcattccatcgtcaaaccccgat
tttccattaacgaatgatgccattgatgaattggaaaattacgtacttgaatatggtatt
cgttccagatcgagctggactggcgacaaggagtgggttttccagcgtttccgaggcttt
gatcaggcagcacaaaccgattcagaaaaagaaatacaacaacgaataaacaagtaccga
tatcaagtcgcacgagcattaaaaccttttgatgagcaaataagaaatgctcgtacagtg
caggaattatgtgagataacctatacgttattggaagatctcgatgtaccaaagcgctta
gagcagacacgcgagatatacgatgatcgaggagaaatagaaaaaggcagggaacaggaa
caagtatggaatgcggttattcagttatttgatgaaatggttgaaatagccggcgaagaa
agcatgaccttatcgacacttcgaacaaccttggatgctggttttgagacattgaaattt
gcccatgttccaccaactattgaccatgtgattgttggtacaattgaccgttcgagaatt
agcggaattaaatgtgcatttttgctaggggtcaatgatggcgtttggccaatgaagccg
gctgcggatggaatgattaatgagcaggaaagagaattactggccggacatgggatgcaa
ctggctagtagcagcaagcaacaattactggacgactggttttatatgtatattgccttt
acagcggcaaaagataggatttgggtgagctatccattaagtgatgaagagggtaaatcg
aaaatgccgtcacagctcattaaacgaatcgaagacttatttccagcatgctgtgatcat
attttactacaggatccggatgaattggcagaagcagatcgttttattactactccgttg
aaaacaagatcagcgttaacagctcaattagcacgaataagaaaagggtaccctgtaggg
ccaatttggtggaatgtactgaattggtatatggaccatcatccgaggtttggtacaaca
cacactattttgcaaagcttatattatcaaaataaacctataaacctatcttctgaaacg
gtggaagaattatatccacaacaggtaaaagcgagcgtgtccagattggaatcctattat
cgctgctcgtatcagcattttgcaaaatacagtttaaatctggatgaacgaaaaatatat
aaactggatgcacctgacatcggacagcttttccatgaagcactgagaacaattacagag
tggatacaagctgatgggaaagaatttgggcaactatcgaagaaagatacagatgtatat
gcgcaaaaagcggtagttaatttggcacctatcctgcaacatcaaatattgcacagttca
aaccgttataaatatattcagaagaaattacaggatgttatcgcaagggcggcttttgtg
ttaagtgaacaagctagaaggagtaacttctcacctgttggactggaacttggattcggg
aagggccaaacactcccaccacttacccttggcttagaaaatggatatgaactcatgctc
cgcgggcgaattgatcgtgtggataaagcagttaatgaagaggatttattccttcgaatt
attgattataaatcgagtgcaaaaggtttgaaccttatcgaggtttattatggactggca
ttacaaatgctggcgtatctggatgttgtactctccaattccgagcaatggcttgggaca
agagctacaccagcaggggtgctttatttccacgtacacaatccgatgatctctaaaaat
gaaaaagtgaatgatgaagcccttgaacaggaaattttccggaagtataaaatgcagggg
atgcttctgtcggatgaagaaatggtgaggcagatggacacatccctagaatcaggctca
agtcaggttgttccagcgggagttaaaaagaatggcggtttttacagttattccaaaata
gcggattatgatacttttacaagcctgcagaaccatattcatcaaatgatgatgcaggca
ggtattgatatgacagagggcggcgtacacttaaatccctatcagcataaacaagaaatt
gcttgtacgtattgcccgttccattcactttgccaatttgatccgatcttagaaacgaac
aattatcgaaaactgacagacatgaaagatgaggatattttagaaagactccgtaaaggg
gagggaaaataa
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