Virgibacillus salidurans: KFZ58_08070
Help
Entry
KFZ58_08070 CDS
T08697
Symbol
rnjA
Name
(GenBank) ribonuclease J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
vik
Virgibacillus salidurans
Pathway
vik03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vik00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KFZ58_08070 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vik03019
]
KFZ58_08070 (rnjA)
Messenger RNA biogenesis [BR:
vik03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KFZ58_08070 (rnjA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4453
Motif
Other DBs
NCBI-ProteinID:
UJL47795
LinkDB
All DBs
Position
complement(1562642..1564309)
Genome browser
AA seq
555 aa
AA seq
DB search
MKFVKNDQTAVFALGGLGEIGKNTYAVQFQDEIILIDAGMKFPEDELLGIDYVIPDYSYL
VQNQDKIKGLFVTHGHEDHIGGIPYLLREINVPIYAGKLALGLIKNKLDEHGLLRNAKLN
TIQEDDVIKFRKTSVSFFRTTHSIPDSYGIVVKTPPGNIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNSEIPGYTMSEKVVGENINDIFGRVDGRLIFATFASNIYRLQQ
VIEAAVKHNRKVAVFGRSMESAINLGQELGYIQAPKDTFIEPNQINRLPAQEVTILCTGS
QGEPMAALSRIANGTHRQIQMIPGDTVVFSSSPIPGNAVSVGRTINKLYRGGAEVVHGPL
SNIHTSGHGTQEDQKLMLRLMQPKYFMPIHGEYRMLKEHLKLSDATGIDPTHSFVMDNGD
VLALGKDNAIIAGKIPSGSIYVDGSGIGDIGNIVLRDRRILSEEGLVIVVVSINMKEFKI
ASGPDIISRGFVYMRESEDLINEAQKKVSAHLEKVMERRTTQWSEIKNEITDTIAPFLHD
KTKRRPMVLPIIMEI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttgtgaaaaatgatcaaacagccgtatttgcactaggtgggctaggtgaaata
gggaaaaacacgtatgccgtacaatttcaggatgaaataattttaatcgatgcaggcatg
aaatttcctgaagacgaattactcggcatcgactatgtcatcccagattatagctatcta
gtacaaaaccaagataaaataaaaggattattcgtaacacatggacatgaagatcacatt
ggaggtattccatatctcttacgtgaaattaatgtaccaatttatgctggaaaactcgcg
ctcggtttaattaaaaacaaattggatgaacatggtttattaagaaatgctaaattaaat
acaattcaagaagatgatgttattaaattccgtaaaacttctgtcagctttttccgtaca
acgcacagtattcccgattcctatggcattgttgttaaaacacctcctggaaatattgtt
cacaccggtgattttaaatttgatttcacccctgttggcgaaccggccaatctgacaaaa
atggctgaaataggcaaagaaggcgtactttgcttgctttcagatagtacaaacagtgaa
attccgggctacactatgtcggaaaaagtggttggggaaaatattaatgatatttttggc
cgggttgacggcagattaatttttgcaacgtttgcctccaatatttaccggcttcagcag
gttatagaagctgccgtgaagcacaatcgtaaagttgctgtgtttggccgcagcatggag
tcagcaatcaatctcggccaggagctgggctacattcaagctcctaaagatacattcatt
gagccaaatcaaatcaaccgtctccctgcacaggaagtaacaattctctgtacaggatcc
caaggtgagccaatggcagctctttcccgtattgcaaatggcacacacagacagatacaa
atgatacctggggacactgttgtattttcttcatcaccaatcccgggaaatgcagttagt
gttggtaggacaattaataaattgtatcgtggtggcgcagaagttgttcatggtccctta
agtaatatccacacatcagggcatggaacgcaggaggatcaaaaactgatgcttcgcctt
atgcaaccgaaatatttcatgccaattcatggtgaatacagaatgctgaaagaacattta
aagctttcggacgcaacaggtattgatccaacccattcatttgttatggataatggtgat
gtactggcactggggaaagataatgcaataatagccggaaaaattccttccgggtcgata
tatgttgatggtagtggtattggtgatattggaaatatcgtacttcgcgatcgtcgcatt
ttatctgaagaaggcttggttattgttgttgtaagcatcaacatgaaggaatttaaaatt
gcttcaggtccggatattatctcacggggatttgtttatatgagagaatcagaagacttg
ataaatgaagcacagaaaaaggtttctgcccacttggaaaaagtgatggaaagaagaacg
actcaatggtcagaaatcaaaaatgaaataaccgacacaatagcaccatttcttcatgac
aaaactaaacgcaggccaatggtactgccgattataatggaaatataa
DBGET
integrated database retrieval system
