Virgibacillus sp. NKC19-16: KFZ58_10505
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Entry
KFZ58_10505 CDS
T08697
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
vik
Virgibacillus sp. NKC19-16
Brite
KEGG Orthology (KO) [BR:
vik00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vik03019
]
KFZ58_10505
03009 Ribosome biogenesis [BR:
vik03009
]
KFZ58_10505
Enzymes [BR:
vik01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KFZ58_10505
Messenger RNA biogenesis [BR:
vik03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KFZ58_10505
Ribosome biogenesis [BR:
vik03009
]
Prokaryotic type
rRNA helicases
KFZ58_10505
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Flavi_DEAD
ApbA
Mt_ATP-synt_B
Motif
Other DBs
NCBI-ProteinID:
UJL44862
LinkDB
All DBs
Position
complement(2030416..2031732)
Genome browser
AA seq
438 aa
AA seq
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MENENNNFNSFSFHPVLYNVIERLEFSRPTEIQQQVIPAVLKGKSVIGKSRTGSGKTHAY
LLPLFNQINVSKRQVQFVITAPTRELATQIYNEVKKMIHYADKDGRWIAKLLVGGTDKQK
TIEKLKEPPHIIVGTPGRILDLVKEDAVSIFSATSFVIDEADLMLDLGFIKEVDQLLVRS
REDIQILAFSATIPQRLQHFFNKYLENPLHVKVDDHFSPETMEHYLIDVKHRDEADILME
ISNTIQPYLAIIFTNGKDIADKLAASLQQRGLEAGIIHGGLTPRERKRVLKEIQNLKYQY
IVATDLAARGIDIKGVSHIINAQLPKEEDFYIHRVGRTARAGMEGTAISLYRETDIKLIE
KLEQNGLTFNYTDVKGGEWQKVKPWNERNLRNEKTTNIDKEAWKQVRKTKKVKPGYKKKM
KQQQSSIKKQLAKNKYKK
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacgaaaacaataatttcaatagcttttcttttcatccagtgttgtataatgtt
atcgaacggttggaattttcacgtcctaccgaaatacagcaacaggttattccagcagtt
ttaaaaggaaaaagtgttattggtaagtctcgtactggttcaggaaagacacatgcctat
ttgctgccattgtttaatcagatcaatgtaagtaaacgacaggtgcagtttgttataaca
gcacctacaagagagcttgcaacccaaatttataatgaagtcaaaaaaatgattcattat
gcggataaagacggcagatggatcgcaaagcttttagtaggtggaacagataaacaaaag
acgatagaaaagctaaaagaaccgccgcatattattgtcggaacacctggaaggattttg
gacttagtgaaagaagatgctgtttccattttttctgctacttcatttgttattgatgaa
gcagatttaatgcttgatctaggttttattaaggaagtggatcaattattagttcgctca
cgtgaagatattcaaatactggccttttcagcgacaattccacaacgattacagcacttt
tttaacaaatatctagaaaatccattacatgttaaggtggatgatcacttttcaccggag
acgatggaacattatttaattgatgtaaagcatcgggacgaggctgacatccttatggag
atatccaatacaattcaaccttatttggcgattattttcacaaatgggaaagacattgca
gataaactagctgcttctctacagcaaagaggattggaagctggcattatccatggagga
ctcaccccacgtgaacgtaaaagggttcttaaagaaattcaaaatctaaagtatcaatat
attgttgcgaccgatttagctgcaagaggaatcgatattaagggtgttagtcacattatc
aatgcacagcttccgaaagaggaggacttctatattcaccgtgtaggcagaacagcaaga
gccggaatggaaggaacagcgataagcctttaccgggaaaccgatattaaacttatcgaa
aaactggagcaaaatgggctgacgtttaattatactgatgttaaaggtggcgagtggcaa
aaggtgaagccatggaatgagcgtaatttacgaaatgaaaaaacaacaaatatagataaa
gaagcatggaaacaggtgcgtaaaacaaagaaagtaaaaccaggctataagaaaaaaatg
aaacagcaacagtcctctattaaaaagcaattagcgaagaataaatacaagaaatag
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