Virgibacillus sp. NKC19-16: KFZ58_11535
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Entry
KFZ58_11535 CDS
T08697
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vik
Virgibacillus sp. NKC19-16
Pathway
vik03030
DNA replication
vik03430
Mismatch repair
vik03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vik00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KFZ58_11535 (dnaE)
03430 Mismatch repair
KFZ58_11535 (dnaE)
03440 Homologous recombination
KFZ58_11535 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vik03032
]
KFZ58_11535 (dnaE)
03400 DNA repair and recombination proteins [BR:
vik03400
]
KFZ58_11535 (dnaE)
Enzymes [BR:
vik01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KFZ58_11535 (dnaE)
DNA replication proteins [BR:
vik03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KFZ58_11535 (dnaE)
DNA repair and recombination proteins [BR:
vik03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KFZ58_11535 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
UJL45050
LinkDB
All DBs
Position
complement(2235012..2238365)
Genome browser
AA seq
1117 aa
AA seq
DB search
MAYTHLQVRSGYSLMNSTITIDKLIEKAKDLNFEALALTDEQVLYGVVPFYNACKNNGIK
PIIGMVVHTMDDQEDMHSCILLAKSNVGYQSLVKISTHMQRLRMTSIGVEELLDYAEGLV
CILPATNRKLATLLETENHDNVMAYLSEWRNLVQQGDFYLGVQDHGMEHEQRIQKPLKAF
HERYNIPVVAINDVRYLNEKDDIAYDCLQAMKNGDRWEMQITDTEAGQKHLRSSFEMEQL
FSSFWPEVIKEAEAIVEKCNVTFDFNRRMIPSYPVPEELNAHTYLEKICWENLHEKYDGN
TEKAAGRLSYELSIIQSMQFSDYFLIVADFINYAKENHILVGPGRGSAAGSLVAYVLGIT
DVDPIEYDLLFERFLNPERLTMPDIDIDFSDDRRDEVIDYVRSKYGEEHVAQIITFGTFA
ARSILRELIKTMDVDERDADYILKHIPVSQNKRIAELVKQSEDLTNYLKQSGKLKALFRV
ATKLEGLPRHISTHAAGVVISENPLMEHIPLTIGANDTNLTQYPMNDLEELGLLKIDFLG
LRNLTLLERIIRSINHTGNKNLSLEMIPENDSKTFALLQTGKTNGIFQLESQGMKNVLTK
LKPSTFEDIVAVNALFRPGPMDFIPTYINRKYEREKVTYPHPDLKPILEKTYGVLVYQEQ
IMQIASHIAGFSLGKADILRRAVSKKQQDVMDEQRAAFINGCTKNGYEKSVAQEIFDWIV
KFSNYGFNRSHAVAYSKISYQLSYLKAHYPANFFAALLSSVANQQDKVNTYMKEMKDLNL
TIQPPSINKSYGTFSVEGKQIRMGLISIKGIGNQVMKEIITVRKQGPFKNLFDFCLRVSL
KTVNRAALELLIMAGAFDDLHSNRASLLASTDHAMEQGELFGEFNDQQALFQDQIKLETS
YVDMEDFSLVKKLADEKELLGIYVSSHPLKEHRNKLRANGYVSINHAKNLVGKRNIKSAA
IVQTIKTIRTKRGDPMAFITIGDEVGDMEAVVFPEVYRASNTWLKEEMIILLDGKIESRN
NRIQWQLSDIQPFDENELKTGEDKRLFIKIAGENSEIALQEINRIASLHPGSTPIIIHHE
GSKKTYKLANSYSINPNPDCVEALSAYFGKTNVVLEK
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atggcatacacacatttacaagtaagaagtggatacagcctgatgaatagtacgattaca
atcgacaagttaatagagaaagctaaagatttaaacttcgaggcattggcacttacagat
gaacaggtgctatatggagtggtacctttttataacgcttgtaaaaataatggaataaag
ccaatcattggaatggttgtacatacaatggatgaccaagaagacatgcattcctgtatt
ctattggcaaaatcaaatgtaggctatcaatcacttgttaaaattagtacacacatgcaa
cgtcttaggatgacaagtatcggggtggaagagcttcttgattatgcagaaggtctcgtt
tgtattttaccagcaactaataggaagcttgcaaccttacttgaaacagaaaaccatgat
aacgtgatggcttatctaagtgaatggaggaatttggttcaacaaggtgatttttatttg
ggtgtacaagatcatggaatggaacatgaacagcgcatacaaaagccactgaaggctttt
catgagaggtataatattcctgttgttgcaattaatgacgttcggtatttaaacgaaaag
gatgatatcgcatatgattgcctacaagcaatgaaaaatggggatcgctgggagatgcag
atcacggataccgaggcgggtcagaaacatttgcgttcctctttcgaaatggagcaatta
ttttcctctttttggccggaagtaatcaaagaagcagaggctattgtggaaaaatgcaat
gtaacattcgacttcaatcggcgtatgatcccgtcttaccctgtgccggaggaattgaat
gcacatacctatttggaaaaaatatgctgggaaaatttgcatgaaaaatatgatggaaat
acagaaaaggctgcgggtcgtttaagctatgaactaagtattattcaatccatgcagttt
agtgattactttttgatcgttgccgattttattaactatgcaaaagagaatcatatacta
gtcggacctggaagaggatctgctgcaggttcgttggttgcatatgtattggggataacg
gatgtagatccgattgaatatgatttgctgtttgagcgttttctaaatccagagcgactc
accatgcctgatattgatattgacttttcagatgatagacgtgatgaggtgattgactat
gttcggagtaagtacggagaagaacatgtagcacaaattatcacatttggtacgtttgct
gccaggtccattcttcgcgagctaatcaaaacaatggatgttgacgagagggatgctgat
tatatattaaagcacattccagtttcccagaataaacgtattgcagagcttgtcaagcaa
tctgaggacttaacgaactatttgaagcaatcgggaaaattgaaggcattatttagagtc
gcaacaaagctagaaggattaccaagacatatctctacacatgcagcaggtgtcgtcatt
agtgagaaccctttaatggagcatattccactaaccattggagcgaatgatacgaattta
acacaatatccaatgaatgatcttgaagagctagggttattaaaaatcgactttctagga
ttgcgcaatttaacattactcgagcgaattatacgatcgataaaccatacaggaaataaa
aatttgtctctggaaatgattccggaaaatgattcgaaaacattcgctcttttgcagacc
gggaaaacaaacggtatttttcaactggaatcacaagggatgaagaatgtacttacaaaa
ttaaaaccatccacatttgaagacattgtagcagttaacgcgctttttcgtcccggaccg
atggattttattccaacctatattaatcgtaaatatgagcgggagaaggttacctatcca
cacccggatttgaaacctatcttggagaagacatacggtgttttggtctatcaggaacaa
atcatgcagatcgcaagtcatattgccggattttcactcgggaaagcggatatactcagg
cgtgccgttagcaaaaaacagcaagacgtgatggatgaacaacgagccgcctttattaat
ggctgcacaaaaaatggatatgaaaaatcggtagcacaagagatttttgactggattgtg
aaattctccaattatggttttaatcgaagccatgctgtggcatatagtaaaatttcgtat
cagctcagctacttaaaagcacattatccggccaacttcttcgccgccctgctcagctct
gttgctaatcaacaggataaagtaaacacatatatgaaagagatgaaagatttaaatctt
accatccaaccaccatccattaataaaagttatgggacgttttcggtggaaggcaagcaa
atacggatgggtcttataagcatcaagggaatcgggaaccaggtaatgaaagaaattatt
accgtccgtaaacagggtccgtttaaaaatttatttgacttttgtttgcgtgtttcattg
aaaactgtaaaccgggctgcattggaacttcttatcatggccggggcttttgatgacctg
cattcgaacagagcaagccttttggcatccactgatcatgcgatggaacaaggggagctt
tttggcgaatttaatgatcaacaagctttatttcaggatcaaatcaaacttgagacaagc
tatgtcgacatggaggattttagcttagtgaaaaaattagcagacgagaaagagcttctt
ggtatatacgtgtccagtcatccgttaaaagagcatagaaacaagcttcgggccaatggg
tatgtttcgatcaatcatgccaaaaatttagttggcaaacggaatataaagagcgcagcg
attgtccaaacaataaagacgatccgaacaaaacgaggggatccaatggcttttatcacg
attggggatgaggtgggtgacatggaagctgttgtttttccggaagtatatcgcgcttcc
aatacatggcttaaagaagaaatgatcattctgttagatgggaaaattgaatccaggaat
aatcgtattcaatggcaactatcggatatccaaccatttgacgaaaacgaattgaaaacg
ggggaagataagcgtttgtttattaaaatagcgggtgaaaatagtgaaattgcacttcag
gaaattaacagaatcgcaagccttcatccgggaagtaccccgattattattcatcatgaa
ggaagcaaaaagacatacaagttagcaaatagctattccatcaacccaaatccggactgt
gttgaagcactatctgcgtatttcgggaaaacaaatgtcgttttggaaaagtaa
DBGET
integrated database retrieval system
