KEGG   Virgibacillus phasianinus: CFK37_02655
Entry
CFK37_02655       CDS       T04951                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
vil  Virgibacillus phasianinus
Pathway
vil03030  DNA replication
vil03410  Base excision repair
vil03420  Nucleotide excision repair
vil03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vil00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CFK37_02655
   03410 Base excision repair
    CFK37_02655
   03420 Nucleotide excision repair
    CFK37_02655
   03430 Mismatch repair
    CFK37_02655
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vil03032]
    CFK37_02655
   03400 DNA repair and recombination proteins [BR:vil03400]
    CFK37_02655
Enzymes [BR:vil01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CFK37_02655
DNA replication proteins [BR:vil03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CFK37_02655
DNA repair and recombination proteins [BR:vil03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CFK37_02655
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CFK37_02655
   MMR (mismatch excision repair)
    DNA ligase
     CFK37_02655
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CFK37_02655
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT RNA_pol_A_CTD RNA_ligase Nlig-Ia HHH BRCT_2 DUF1877 5_3_exonuc
Other DBs
NCBI-ProteinID: ASK61168
UniProt: A0A220TZA1
LinkDB
Position
complement(529951..531954)
AA seq 667 aa
MDKQQAQEKIAALTELLNQYNFEYHVLDKPSVPDAEYDQKMQEIRALEEEYPEHVTPESP
TQRVGGAPLEGFKKVQHNIPMLSLGNAFNEDDLRDFERRAASGTDSKLSFVCELKIDGLA
VSLTYENGKFVRGATRGDGTTGEDITSNLRTIKSIPLSIKEKETIEVRGEAFMPHKSFLA
LNERREKKEEEPFANPRNAAAGSLRQLDPKIAASRNLDIFLYGVGDWEAEPLSSHSERLD
YLKELGFKTNPEWKKCETIEEVIDYVTHWETERPNLSYEIDGIVIKVDSLDQQEELGFTA
KSPRWAIAYKFPAEEVMTTLHDIELSVGRTGVITPTAILEAVKVAGTTVKRASLHNEDLI
RAKDIKLGDTVVIKKAGDIIPEVVRVVEEKRTGEEKDFRMPEHCPACESELVRLEEEVAL
RCINPNCPAQLKEGLIHFVSRNAMNIDGLGEKVIIQLFQERLIHTIADIYRLEREDLLKL
ERMGEKSVDNLQRAIEVSKDNSLEKLLFGLGIRFVGAKAAKTLATHFETMEGLMRAGYED
LIGVDEIGDKMADSIAQYFSEEEVIDLVKELADIGVNMTYKGPKKQDVAEDTIFSGKTVV
LTGKMEILTRPEAKAAIEQLGGSVTGSVSKNTDYVIAGEDAGSKLDKAQKLGVSIWNEQQ
LREVLGK
NT seq 2004 nt   +upstreamnt  +downstreamnt
gtggacaaacaacaggcacaagaaaaaatcgctgcactaaccgagttgctgaatcaatat
aactttgaataccatgtgttggacaagccgagtgttcccgacgcagagtatgaccaaaaa
atgcaggaaatccgtgcattggaagaagaatatccagagcatgtgacacctgaatcacca
acacagcgcgtcggtggtgcaccactggaaggttttaagaaggtacagcataatataccg
atgttaagccttggcaatgcctttaacgaagatgacctgcgcgattttgaacggcgcgca
gcaagtggtacggattccaagctctcatttgtatgtgagcttaaaattgacgggctggcc
gtatcattaacctatgaaaatgggaaatttgttcgtggcgcaacacgtggcgacggaacc
accggggaagatattacaagtaatcttagaacaattaaaagtattccactatccattaaa
gagaaggaaaccattgaagtacgtggtgaagccttcatgccgcataaatcctttttggct
ttaaatgaaagacgtgagaaaaaggaagaagaaccatttgctaaccctaggaatgccgca
gctggttcattacgtcaacttgatcccaaaattgcagccagccgtaacctggatatattt
ttatatggtgttggcgactgggaggcagaaccgctttcctcgcacagtgaacggttagat
tacttaaaggaacttggatttaagacaaatccggaatggaaaaagtgtgaaacaatcgag
gaagtaattgactacgtaacccattgggaaacagaacgtcccaatctaagctacgaaatt
gatggtattgtcattaaagtagatagtctggatcaacaggaggaactcgggtttacggca
aaaagcccgagatgggcgattgcgtataagtttcctgctgaagaggtaatgacgacctta
catgacattgagctaagtgtaggacgcacgggcgtgattactcccactgcgattttggaa
gccgttaaggttgcgggtaccacggttaagcgtgcttctttacataatgaagacctaatc
cgggctaaagatattaaactcggtgatacagtcgttattaagaaagcaggagatattatt
ccggaagttgtccgggttgttgaagaaaaacgaaccggtgaagagaaagatttccgcatg
cctgaacactgtccggcttgtgaaagtgagcttgtccgtttagaagaagaggtagctttg
cgttgcattaatccaaattgtccggcccaattaaaagagggactaattcattttgtttca
agaaatgctatgaatattgatggtctaggggaaaaggtaatcattcaacttttccaggaa
agactcattcatacaattgctgatatttatcggttggaacgtgaggatttattaaaactg
gagcgaatgggtgaaaaatcagttgataacctccaaagggcgattgaggtttccaaagat
aattcgttggaaaagctcctatttggactgggaattcgctttgtaggggcaaaggctgca
aagaccttggcaacgcactttgaaactatggaagggctgatgcgggctggctacgaggat
ctgatcggcgttgatgaaataggcgataaaatggctgactccattgcgcaatatttttcc
gaggaagaagtaatcgacctagtgaaagagctagcagatattggtgttaacatgacatat
aaaggaccgaagaaacaggatgttgcagaagacaccattttctccggaaagacagtggta
ttaaccggaaagatggaaattttgacccggcctgaagcaaaagccgctatcgagcaatta
gggggatccgtaacaggcagcgtcagtaaaaataccgattatgttatagcaggggaagat
gctggttcgaagctggataaagcccagaaacttggtgtctccatttggaatgaacaacag
cttagagaagtcttaggtaagtaa

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