Varroa jacobsoni: 111258546
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Entry
111258546 CDS
T07417
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
vja
Varroa jacobsoni
Pathway
vja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111258546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vja03041
]
111258546
Spliceosome [BR:
vja03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
111258546
Complex C
U5 SnRNP specific factors
111258546
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Septin
Ras
Motif
Other DBs
NCBI-GeneID:
111258546
NCBI-ProteinID:
XP_022685646
LinkDB
All DBs
Position
Unknown
AA seq
976 aa
AA seq
DB search
MDHSDLYDEFGNYIGPDLESSSEEEEDERDEPDDDDDVGKGDADEEVTEETMQIVLHEDK
KYYPTAVEVYGEDVETIVQEEDAQPLTEPIVQPIKQKKFAHSEQNLPDTTYDLEFLADLM
DTPELIRNVALIGHLHHGRTTFVDCLIEKTHPHFRAREGRSLRFTDTLYTEQERGVSIKS
SPVSLVLQDVKSKSYLMNLLDTPGHVNFSDEATAALRLCDGAVLFVDAAEGICLQTEQIL
KHCIQEKVRVILCINKIDRLMLELKLPPADAYYKLRNVIEEINALIVLYSEEPEERLLNP
LLGNVCFASSQYDLCFTLKSFAKMYADTHGGLEYKEFARRLWGDMYFSAKTRKFSRKPPH
GSAQRSFVEFILEPLYKLFAQVVGDVDGNLPGLLDQLGIRLSKSEMKMNIRPLLRMVCSR
FMGDNFAGFVDMLVEHVPPPDRVLLPRAEQIFSGPISVEGQDALLGKSILKCDSNGPLLL
NTTKQYSSQDATSFHVFGRVFSGTLYSGQQVRVLGEGYSQMDEEDSRVMTVGRLWIHESR
YQIEVNRVPAGNWVLIEGVEASIVKTSTIVDLKIKCPLYIFRPLKFLTKSVCKIAVEPVN
PSELPKMLDGLRKVNKSYPLLTTKVEESGEHVIFGTGELYLDCVMHDLRKMYSEIDIKVA
DPVVAFCETVVETSSLKCFAETPNKKNKLTMIAEPLEKGIAEDIETQVVEIGWDRKRLGE
FFQTKYDWDLLAARSIWAFGPDSQGPNILVDDTLPSEVDKTLLSSVRDSVVQGFQWAVRE
GPLCEEPIRNCKFKLLDAVVAPESIHRGGGQVIPTARRVAYSAFLLATPRLMEPYYYVEV
HAPADCVSAVYTVLARRRGHVTQDAPMPGSPLYSIKAFLPAIDSFGFETDLRTHTQGQAF
CLSMFHHWQIVPGDPLDKSIQIRPLEPQPAPHLAREFMMKTRRRKGLSEDVSINKFFDDP
MLLELARQDVMLNYPL
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atggatcattcagatttatacgatgagtttggcaattacattggtcccgacctcgagtcg
tcgtctgaagaggaggaagacgaacgcgatgagccagatgatgatgacgacgtcggtaaa
ggagacgccgatgaagaagttacagaggaaactatgcagattgttcttcacgaagataag
aaatattatcctactgcagttgaggtatacggcgaggacgtagagacgattgtacaggag
gaagatgctcaaccacttacagaaccgattgtgcagcccatcaaacagaagaaattcgct
cacagcgagcaaaatttgccagatacaacgtacgatcttgagtttcttgctgacctcatg
gacacgccggagctgatccgaaacgtggcgttgatcgggcatctgcatcatggcaggaca
acattcgtcgattgccttatcgagaagacgcacccccattttcgagccagggagggtcgc
agtctgcgcttcaccgataccctgtacacagaacaagagcgtggtgtaagcattaaaagc
tcgcctgtgtcacttgttttgcaagatgtgaaaagcaagtcatatctcatgaatttgctg
gatactccaggccatgtcaacttttcggatgaggcgaccgcagctcttaggctgtgcgac
ggcgcggttctatttgtcgacgcggctgagggaatttgcttgcaaacagagcagatactt
aaacactgtatccaggagaaagttcgggtcattctatgtattaacaaaatcgatcggctg
atgcttgaacttaagctgcctccagccgatgcttactacaagctacgtaacgttatcgag
gaaatcaatgcgttaatcgtactttattccgaagaacccgaagaaaggcttcttaatcca
ttattaggtaacgtatgcttcgcttcctctcaatacgacctttgctttactttgaagtcg
ttcgccaaaatgtacgccgatacacatggtggcctcgaatataaggagtttgctcgccgg
ctttggggcgacatgtacttcagtgctaaaactcgcaaattcagccgtaaaccaccgcac
ggttctgcccagcggtcatttgtcgaatttatacttgagccgctatataaactattcgca
caggttgttggcgatgttgatggtaatctgccgggtctccttgatcagcttggtatacgt
cttagcaagtctgaaatgaagatgaatattcggcctcttttacggatggtctgctcacgt
tttatgggcgacaattttgctggttttgtcgacatgctggtagaacatgttccgccgccc
gatcgcgtacttttacccagggccgaacaaattttctcaggtccaattagcgtagagggt
caagacgcgcttttgggcaaatcaatcctcaaatgtgactccaatggacccctgctgctt
aacaccacgaagcagtactcatcgcaggacgctactagcttccacgtgtttggtcgcgtt
ttctccggcacactatattcaggccaacaggtgcgagtcctgggcgaaggctactctcaa
atggatgaagaggattcgcgagttatgactgtaggtcgattgtggattcatgaaagccgt
tatcagattgaggtgaatcgagtgccggctggaaactgggtacttattgagggcgttgag
gcgtcaattgtgaagacatcaacaattgtcgacctgaaaattaaatgcccattgtacatt
ttccgacctcttaagttcctcacaaagagcgtgtgtaaaatagccgtggaaccggtgaat
ccgtcggaattgcccaaaatgttagacggcctgcgtaaagtaaataagagttaccctctc
ctaactactaaagtggaagaaagcggtgagcatgtcatctttggaacaggcgagctttat
ctcgactgtgtaatgcacgatcttcgtaaaatgtattcggaaatagatataaaggtggct
gacccagtagtcgctttttgcgaaaccgtcgtcgaaacatcgtcactgaaatgtttcgcc
gaaacacctaacaagaaaaataagcttacaatgattgccgaacctctggagaaaggcatc
gctgaggatattgaaactcaagtagttgaaattggttgggaccgaaaacgtctaggtgaa
ttctttcagaccaagtatgattgggatcttctagctgctcgatctatttgggcattcggc
ccagattctcagggaccgaatatccttgtagacgacacgcttccttctgaggtagataag
acgttgttgtcatcagtacgagacagcgtcgtccaagggtttcagtgggctgtaagagaa
ggtcctttatgtgaagagccgattcgtaattgtaaattcaagttgcttgatgctgtagtg
gcgccggagagtatccatcgaggtgggggtcaagttattcctaccgctagacgagtggca
tactcggccttcctcctggctactccacgtctcatggaaccatattattacgttgaggtt
catgccccggctgactgtgtgtcagcagtgtacactgtgctggctcgccgaagaggtcat
gtaactcaggatgccccaatgcctggatctccgctctactcaatcaaggctttccttccg
gctattgattcattcggttttgagacggatttaagaacgcatacccaaggccaagcgttt
tgtctgtccatgttccaccattggcaaatcgtccctggagatccgcttgacaagagtata
caaatacgacccctcgagccgcaaccagcgccccatctggctagagagttcatgatgaag
acgcgccggcgcaaaggcctttcggaagatgtttctattaacaaattctttgatgatcct
atgttgctcgagctcgccaggcaggatgttatgcttaactatccgttataa
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