Vibrio japonicus: NP165_03495
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Entry
NP165_03495 CDS
T08510
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vjp
Vibrio japonicus
Pathway
vjp03030
DNA replication
vjp03410
Base excision repair
vjp03420
Nucleotide excision repair
vjp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vjp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NP165_03495 (ligA)
03410 Base excision repair
NP165_03495 (ligA)
03420 Nucleotide excision repair
NP165_03495 (ligA)
03430 Mismatch repair
NP165_03495 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vjp03032
]
NP165_03495 (ligA)
03400 DNA repair and recombination proteins [BR:
vjp03400
]
NP165_03495 (ligA)
Enzymes [BR:
vjp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NP165_03495 (ligA)
DNA replication proteins [BR:
vjp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NP165_03495 (ligA)
DNA repair and recombination proteins [BR:
vjp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NP165_03495 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NP165_03495 (ligA)
MMR (mismatch excision repair)
DNA ligase
NP165_03495 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NP165_03495 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
DNA_pol_lambd_f
HHH
5_3_exonuc
DUF4874
DZR_2
Motif
Other DBs
NCBI-ProteinID:
UUM31229
LinkDB
All DBs
Position
1:734446..736455
Genome browser
AA seq
669 aa
AA seq
DB search
MSPEIQEQLNQLRETLHYHGVKYYVEDSPEIPDAEYDRMMRELIDLEAQHPELVTLDSPS
QRVGGAPLSAFESVAHEIPMLSLDNAFDDDELNSFHKRMRDRAPTATFDVFCCEPKLDGL
AVSLLYENGVLVQAATRGDGTTGENITDNVRTIKAIPLKLQGSDWPERLEVRGEVFMPKA
GFEKLNELALKKGDKVFVNPRNAAAGSLRQLDSKITATRPLSFYAYSVGVVSGASLSESH
YERFLQLKGWGLPMCPETRLVSSLDEVKAYYQDILARRDELPYEIDGVVIKVDDVSLQEQ
LGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLH
NADEIERLGVMVGDCVMIRRAGDVIPQIVSVVKDRRPDNAREIVFPTHCPVCHSEVERVE
GEAVARCSGGLVCQAQRKEALKHFVSRKAMDVDGLGDKVIEQLVDREMVETPADLFKLSA
GVLTVLDRMGPKSAQNIVNALNKSKETTLPRFLYSLGIREVGEATAANLAQHFKTLDAVK
NSTHEQLIEVQDIGGIVASHITAFFSQDKNLKVIDELLEQGIFWADIEEKSEDAPQPLAG
KTVVLTGTLSQLSRNDAKAALQNLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGVEVR
TEQDLIEML
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccagagattcaagaacagcttaatcagctacgcgagaccctgcattaccacggg
gttaaatattacgttgaagatagtccagaaattcctgatgcggaatatgatcggatgatg
cgtgagcttattgatttggaagctcagcatcctgaattggttacactggattcgccaagt
caacgggtcggtggtgcccctttatcggcgtttgaatcggtggcccacgaaatcccaatg
ctgtctctagataatgcttttgatgacgatgaacttaactcttttcataaacgcatgcgt
gatcgcgcaccaactgcgacattcgatgtgttttgttgtgagcctaaattggatgggctg
gcggtaagtttgttgtacgaaaacggcgtattggttcaagcggccactcgtggcgacggt
acaacaggtgaaaatattacggacaatgttcgtacgatcaaagcaattccattaaaactg
caaggctcagactggcctgaacgccttgaggtgcgtggtgaagtctttatgccaaaagct
ggctttgaaaagctaaacgagctggcactaaagaaaggtgacaaagtatttgttaacccg
cgtaatgctgcggcaggtagcctacgtcagcttgattcaaaaattaccgcgacgcgtccg
ctaagtttttacgcttacagtgtgggtgtggtaagcggagcaagcctttcagagagccac
tacgagcgattcttacagctaaaaggctggggattaccaatgtgccctgagactcgtctt
gtaagcagtctggacgaagtgaaagcgtattatcaagacatattggctcgtagagacgag
ttaccttatgagattgatggcgttgttatcaaagtcgatgacgtttctctacaagagcag
ctcggttttgtggccagagcaccacgctgggcaattgcgtataagttcccagcccaggaa
gaaatcaccacattgaacgaagttgagtttcaagtcgggcgtacaggagctattacccca
gtcgctaagttggagccagtctttgttggtggagtgacagtaagcaatgcgacattacac
aatgcagacgaaattgaacgtttgggggtgatggttggtgactgcgtcatgattcgacgt
gcgggcgatgtgattccacagatcgtctccgttgtgaaagatcgtcgaccagataacgca
cgcgagatcgttttcccaacgcattgtcctgtttgtcactctgaagttgagcgagtagaa
ggtgaagccgttgctcgttgctccggaggtctagtctgtcaagcgcaacgtaaagaagcg
ttgaaacactttgtttctcgaaaagcaatggatgtagacggtctaggtgacaaagtgatc
gaacaactggttgatagagaaatggtggaaacacccgctgatctatttaagttatcagcg
ggagtactgacggttttagatcgtatggggcctaagtctgctcaaaatattgttaatgcc
ctcaacaaatcgaaagaaacgacgcttcctcgtttcttgtattcgttaggaatacgtgaa
gtcggtgaggcaacagcagcgaatttggctcaacatttcaaaactctcgacgcagtcaag
aattcaacgcatgaacagttgattgaagtacaggatattggtggcattgttgcgagtcat
atcacggcatttttttcgcaagataaaaacttgaaagtgattgatgagttactagagcaa
ggtattttctgggctgatattgaagaaaaaagtgaagatgcccctcaaccgctagctggt
aaaacagtcgtactgacgggtactttatcgcagttgtctcgtaacgacgcgaaagcggct
ttgcaaaacttaggggcgaaagtaacgggaagtgtctctaagaaaaccgatattctattt
gcgggtgaaaatgcgggttcaaaactcgctaaagcccaagagcttggggttgaggtccgt
acagagcaagatctaatcgagatgctatag
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integrated database retrieval system
