Vibrio kanaloae: BTD91_02475
Help
Entry
BTD91_02475 CDS
T07086
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vka
Vibrio kanaloae
Pathway
vka03030
DNA replication
vka03410
Base excision repair
vka03420
Nucleotide excision repair
vka03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vka00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BTD91_02475
03410 Base excision repair
BTD91_02475
03420 Nucleotide excision repair
BTD91_02475
03430 Mismatch repair
BTD91_02475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vka03032
]
BTD91_02475
03400 DNA repair and recombination proteins [BR:
vka03400
]
BTD91_02475
Enzymes [BR:
vka01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BTD91_02475
DNA replication proteins [BR:
vka03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BTD91_02475
DNA repair and recombination proteins [BR:
vka03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BTD91_02475
NER (nucleotide excision repair)
GGR (global genome repair) factors
BTD91_02475
MMR (mismatch excision repair)
DNA ligase
BTD91_02475
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BTD91_02475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QPK04841
LinkDB
All DBs
Position
1:complement(594292..596265)
Genome browser
AA seq
657 aa
AA seq
DB search
MTEFKFNNDQLSIIKKLEADLDLNMLEIAIRESAFHSLRSEDQLSLLIVANACYRSGFKV
ISDSQYDKFSNEFAEKNPEHPFVTSVESEVMSLGKTVSLPQKMLSTDKAYSKEEIQKWLD
RILKASDALSIDTRDINIRVTPKLDGYAAFDDGEKLYTRGDGVKGQDVSRAFERGLEIAR
SGERGLGAGEIVIDKTYFEEKLSQYFENSRNIQAAIIAEKNVDPRVQQAINDGACVFYPF
SLIDNWTGHYKELIANFEDIIDQIWNAVGYDVDGVILEATDSRIKEYMGATRKFHRWQIA
FKINEEAAEVEVLSVTPQTSRTGRVSPVAELVPTKISGATISRVTVHHYKMVKANGVGQG
AIVQIVRSGLVIPKIEKVIRQVEPQLPTNCPSCQSHLIWESDHLICPNKSDCPAQTENTL
IHFFKTLGNNDGFGPKVIEKLSNYGVKHIHQIYQLKAHQFVGYGFGEKTSKNLFNQLQAS
RDVEIEDWRFLSAFGVSRLGGGNCEKLLQHYALTDLFSLSAKDIATLDGFAKLSAEAIVE
GLSNIKDEFFKVYTLGFNLGITPKGSDESESSSPIAGAVIVFTGSMVQGKRSDMEKQAKS
LGAKVGKSVTSKTTYLVAGEKVGETKINGAKDKGVSVLSEDDYIELIQGLASSDRMF
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgacagaatttaagtttaacaatgatcagctctcaatcattaaaaagttggaagcagat
cttgatttaaacatgctagaaatagcaatcagagaaagtgctttccactcacttagaagc
gaagaccaactatcattgttgatagtagcgaatgcatgttatcgctctggttttaaggta
attagtgattctcagtatgataaattcagtaatgagtttgcagaaaaaaatcctgaacat
ccgtttgttacatctgttgaatcagaggttatgagcttaggtaaaacagtttcgctccct
caaaaaatgctatctacagataaggcttattccaaagaagagattcagaagtggcttgac
cgaattcttaaggcttcagatgctttgtctatagacactagggatatcaatattcgagtt
acaccaaaactcgatggttatgcagcctttgatgatggcgaaaagctatatacaaggggc
gatggtgttaaaggtcaggatgtttcgagagcatttgagcgtggacttgaaattgcacga
agtggagagcgagggcttggcgctggtgagattgttatcgacaaaacttactttgaagag
aagctaagtcaatactttgaaaattcacgtaatattcaagcagccattattgcagaaaag
aatgttgatccgcgagttcaacaagctattaatgatggagcctgtgtgttctacccattc
agtttgattgataattggactggtcactataaagaactgatagctaactttgaagatatc
atcgatcagatttggaatgctgtgggatatgatgtggatggcgttatcttagaagcgaca
gactctcgcatcaaagaatacatgggtgcgacgaggaaattccatcgctggcaaatagcc
tttaagattaatgaagaagccgctgaagtagaggtattaagtgtaacaccacaaacctcc
agaacagggagggtatcacctgttgctgagcttgtgccgaccaagatcagtggcgcaacc
ataagtagggtgacagttcaccattataagatggttaaagctaatggagtcggtcaaggg
gctatagttcaaattgttcgaagtggtctagtaatacctaagatcgaaaaggttattaga
caagtagaacctcaactgcctacgaattgtcctagctgtcaatctcaccttatttgggag
tcggaccatttgatttgccctaataagagtgattgtccagcacagacagagaataccttg
atccatttttttaaaaccttgggcaacaacgatggatttggtcctaaggttattgagaag
ttgagtaactatggtgttaagcatatacatcaaatctatcagttaaaagcacatcaattt
gttggatatggctttggtgaaaaaacttctaagaacctatttaatcagcttcaagctagt
cgcgacgttgagattgaagattggcgctttttatctgcatttggtgtaagccgtttaggt
ggcggaaactgcgaaaagttactccaacattacgcactcacagacctattttctctttcc
gctaaagatatagctacacttgatggcttcgcaaaattgagtgcggaggctattgtagaa
ggattatcaaatattaaggatgagttttttaaggtttatacgcttggctttaatctggga
attacacctaagggctcagatgaaagtgagtcttcatctccaattgctggagcagtgata
gtgttcacaggctcaatggttcaaggtaaaaggagtgatatggagaagcaggctaaatct
ttaggggctaaagttgggaaatctgtaactagtaaaacaacctaccttgtcgctggagaa
aaagttggtgaaacaaaaattaatggtgctaaagataaaggtgttagtgttctttcagaa
gatgactatattgagcttattcaaggtttagctagttctgatagaatgttttaa
DBGET
integrated database retrieval system
