Varanus komodoensis (Komodo dragon): 123020576
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Entry
123020576 CDS
T07701
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
vko
Varanus komodoensis (Komodo dragon)
Brite
KEGG Orthology (KO) [BR:
vko00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
vko03036
]
123020576 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
vko03400
]
123020576 (SMCHD1)
Chromosome and associated proteins [BR:
vko03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
123020576 (SMCHD1)
DNA repair and recombination proteins [BR:
vko03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
123020576 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
123020576
NCBI-ProteinID:
XP_044280410
Ensembl:
ENSVKKG00000000689
LinkDB
All DBs
Position
Unknown
AA seq
2051 aa
AA seq
DB search
MAAAEEGSVGGALTLFVYDRRQKKSDDSEKVINCGQENYGHFRSAVCQVFGISSEENFII
TTTNRKEMTNENFSEMVKDKMTFYLLQSVDQSLPSATQERIDFLPHYDTLVKSGMYEYYA
SEGQNPLPFALAELIDNSLSATSQNTGVRRIQLKLLFDDTQGKPAVAVIDNGRGMTSKQL
NNWAVYRLSKFTRQGDTESVGISDHSGYVHPPAVPRSLNSDISYFGVGGKQAVFFVGQCA
RMISKPASSQDVHELVLSKEDFEKKEKNKESIYSGYIRNRKPADSSHIINDDERFLHNLI
MEEKDKGSFTAVVITGVQPEHVQYLKNNFHLWPRQLTHIYHYYIHGPKGNETNPTVKETR
AFNNIDIEIAMFEKGKTPKILNLREIKDDMQTLYINTAADSFEFKAHVEGDGVVEGVMRY
HPFLYDKETYPEDPCFLSRLKDDDDEDEEYYVIEKGARGKRPIFECFWNGRLIPYTTVED
FEWCALPKKRGLTPVECYNRISGVLFTNDKFQVSTNKLTFMDLELKLKDKNTLFTRVVNG
QEQRMKIDREFALWLKDCHEKYDKQIKFTLFDGIITRTDLASKRMQSPWATYLAIEWDGK
TYKTDQLVKTIKTLPILHGSIRKFFLYGDHDGDVYATGGDVEIALASTTDKDPGCVGKIS
RKPLTWSHSSAGQEPKELYAETKIIPICKLDRSVSDTAVKKYIEEEMARLPDKLSITWPE
GDELIPNETKPAGATIGALRIEILNKKGEAMQKLPGSSHGGSKKLLVELKIILHSPSGNK
EIISHISQHGSKWPYWFKKMENMNKLGTYTLKLQVVLNESNADTYAGRALPSATFKFDII
AGKPYKFSIGLLDPPFRVGCPFNIPLDVQDEFGHATHLTDDIVPILEASGLTLQYEELDR
GPKCAIKGITAKGLVNSYQGKNFNMKIILPGLQEESQTLKFKLLPGPPQKLNVKPDSDIL
KIENGTSLPFHVEVLDEVGNITTQPKLIVHCKFSGATDLPVYAVDCSNAGSNILTGPVLH
VQNIKKDQTLTARIEIPSCKTVPALEKTIKLLPSSRVAKLQIFSVGGEKAIQIKHQDEIN
WIAGDVMQNLIFQMYDEGEREIIITAALAEKIKVNWTPKINRDELVKGLLPDVKVPTSVK
DVRYCLVTFHDDQVSLESAFTVRPLADEPKSIKCQIKGSNVLHMGEKLQSDIEVIITDQH
GNHIQNLIPSCVNSLGISGNGLDKSDLKILWQEDTQSIWVNGIKFKTGPPGIKELCFAWR
EFSQFLRLHLIAGLPAKLVLVDWAELEKPVSVINGKELQKPLLVQLCDQWNNPSSEPNVK
ITLSKPSNVKLIPLNPLQKTDENGRANFGDVCIHAPRGEHGLQFKASYNKNTLYSPVITL
NVLPDPEKPVHVNVKYDKNVAFAAGSIFPDFMISVCSEDDNIIKNINSGRISMKMWEGHS
TGTLPQNVTTFGCTKTKDDKDEGFFYFRDIMVPEKVGMYTIQFAFAIDKINILNSDQVII
EVVPNKPAQLMPRSLPNTPAVSNVRAVGSRTLVKDLTLIIMDEYKNCTGNDLDGKIIAQI
KSSIEKDMEIPLFQGNTSTVEFPFHKGIVEIEDLVLAENSPGRDSTEYSLVFEPVIPTLK
RHLKPYYLSFMFYNGYKRQQQMAMLTKERDRLAQSVQVYRSMFDTSNQLLAELRCQVQEA
EAKESQVKNELKVHQIGIPQTNVLQFVDSLIKQKRTEQEGIMKQPRRTCTLNNDHKGNQD
VLGKISHLAQIEDNEVAKVISWHLASDMDCVVTLTTAAARRIFDETQGRQQVLPLDSVYK
KTLPDWNSRPLPHLRNGKNCFKPIGNPLFARSLLTFPEHVEDCQTVFGLLLGDTIIIDNL
DAANHYRKEIVKITHCPTLLTREGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPLPQRYY
VLSTQLDLLHQYHASVVRLNHIKTELKVQEHSVNTPEMQKRKEELAEHEKNLKLIEQQLG
ISSSGQCTKSSNQPEELDLFDMPNPPKRMRREITKRSYSSEEWISAPPAKKQQQTATATS
EVNGTSRKKKT
NT seq
6156 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcggaggagggaagtgtcggcggcgcccttacccttttcgtgtatgaccgg
cggcagaaaaagtcagacgacagcgaaaaagttattaactgtggtcaagaaaactacggg
catttccgaagcgctgtgtgtcaggtatttggtatttcctctgaagaaaattttattatc
acaacaactaatagaaaagagatgacaaatgaaaacttcagtgaaatggttaaagacaag
atgactttctatttactacaatcagttgatcagtcacttccctcagcaacacaggaacgc
attgatttccttccccattatgacacacttgtgaaaagtggaatgtatgaatactatgct
agtgaggggcaaaatccactgccatttgctctggcagaattaattgacaattcgttatca
gctacttcacagaatacaggtgtccggagaatacagttaaagctgttatttgatgacacc
caaggaaaaccagctgttgctgtgattgataatggcagaggcatgacatctaaacaactt
aataattgggctgtatatcggttgtcaaaatttacacgacaaggtgatacagaaagtgtt
ggaattagtgatcattctgggtatgtacatcctccagcagttcctcgcagtttaaacagt
gatatatcatattttggagttggtggtaaacaagcagtgttttttgttggacaatgtgcc
agaatgataagcaaacctgcaagttctcaagatgttcatgagcttgttctttcgaaagaa
gattttgaaaagaaagagaaaaacaaagaatctatatacagtggatacataagaaacaga
aagccagctgattcttcccatattattaatgatgatgaaagattcctacacaatctaatc
atggaggaaaaagacaaagggagcttcactgcagtggttattactggggtacagccagaa
catgtgcagtacctaaaaaacaattttcacctttggccaagacaactaacgcatatatat
cattactatatccatggaccaaaaggaaatgaaactaatccaacagtgaaggaaacaaga
gctttcaataatattgatatagagattgcaatgtttgaaaaagggaagacacctaagatt
ttgaatcttagagaaatcaaagatgatatgcaaaccttatatataaataccgcagcagat
agttttgagttcaaagctcatgttgaaggagatggtgtggtagaaggtgttatgcgttat
catcctttcttgtatgataaagaaacctaccctgaagatccttgctttctttcaagatta
aaagatgatgatgatgaagatgaagaatactatgtaatagaaaagggagccagagggaaa
agacccatttttgaatgtttttggaatggaagattaataccatatacaacagtggaagac
tttgagtggtgtgccctgcccaagaagagagggcttaccccagttgagtgttacaacaga
atttctggtgtgttgtttacaaatgacaaatttcaggtcagcacaaacaagctgactttc
atggatttggaattaaagttaaaagacaaaaatacactttttacaagagttgtcaatgga
caggaacagagaatgaaaattgacagagaatttgccttatggctgaaggactgccatgaa
aaatacgacaaacagatcaaatttactttgtttgatggaataattacacgcactgatctg
gcctctaaaagaatgcaaagtccttgggctacatatctagcaatagagtgggatggaaaa
acatataaaactgaccagctggtaaaaacaattaaaacactcccaattctccatggaagt
ataagaaaattttttttatatggggatcatgatggagatgtgtatgctactggaggagat
gttgaaatagctttggctagtactactgataaggatcctggctgtgtggggaagatcagc
aggaaacctttaacatggtctcattccagtgcagggcaggaacctaaggaactgtatgca
gaaacaaagattattccaatatgcaaactcgatcgttcagtgtctgacacagcagtgaaa
aaatatattgaagaggaaatggccagacttcctgataagttgtcaataacatggcctgaa
ggagatgagttgataccaaatgaaaccaagcctgctggagctactataggagcactaaga
attgaaatattgaataaaaaaggagaagctatgcaaaagcttcctggttcaagtcatgga
ggatcaaagaaactgcttgtggaactaaaaattattttgcactcacctagtggaaataag
gaaatcatttctcatatcagtcagcatgggagtaaatggccttactggttcaaaaaaatg
gaaaatatgaataaacttgggacctacacactgaaactacaagtagtgctaaatgaaagc
aatgcagatacatatgcaggaagagcccttccctctgcaacctttaaatttgatataatc
gcgggcaagccttacaagttttcaataggtcttttggatcctccttttcgagttgggtgt
ccgttcaatattcctctagatgtccaggatgaatttggtcatgctacccatctgacagat
gatattgtaccaatccttgaggctagtggtttaacattacaatatgaagaactagataga
ggaccaaagtgtgcaattaagggcataactgctaaaggcctggtgaacagttaccagggc
aagaactttaatatgaagatcattcttcctggtctgcaagaagaatcccagactttgaaa
tttaaacttcttccaggcccacctcagaaactaaatgttaaaccagattctgatatcttg
aaaattgagaatggaacatcactcccttttcatgttgaagtgctggatgaagtagggaac
ataacaacacaaccaaaactaattgttcactgcaagttttcaggagctacagaccttcct
gtgtatgctgtggattgcagtaatgctggatcaaatatcttaactggaccagttctgcat
gttcagaatataaagaaagatcagacacttacagcaaggattgaaatacctagttgtaaa
actgttccagcactggagaagacaattaaattgcttcccagtagtcgcgttgcaaaacta
cagatttttagtgtcggaggagaaaaagctattcagataaagcaccaagatgaaattaac
tggattgcaggtgatgtgatgcaaaatctcatcttccaaatgtatgatgagggagaaaga
gagattataataactgcagctctggctgaaaaaattaaggtgaattggaccccaaagatt
aacagagatgagttggttaaaggattattacctgatgtgaaagtaccaacatctgtaaaa
gatgtacgctattgtctagttacattccatgatgatcaagtatctttggaaagtgcattt
acagtcagaccacttgctgatgagccaaaaagtattaaatgccaaataaaaggatccaat
gtgttacatatgggtgaaaaattacaaagtgacattgaggtaattattacagatcagcat
ggaaatcatattcagaaccttataccatcttgtgtgaattcattgggaatttctgggaat
ggcctggataagtcagacttgaagattctttggcaggaagatacacaaagcatttgggtc
aacggcatcaagtttaaaacaggtccacctggaatcaaggaattgtgctttgcttggcgt
gaattttctcagttcttgagattacatttgattgcaggacttccagctaaattggtactt
gtggattgggctgagttagagaaacccgtgtcagtgattaatggcaaagaactacagaaa
ccccttctagtccaactctgtgatcaatggaataacccatcttctgaacctaatgtcaaa
atcaccctttcaaagcctagcaatgtaaagcttatacctttgaacccactccagaaaaca
gatgaaaatggtagagcaaattttggagatgtttgtattcatgctcctaggggagaacat
gggttgcagtttaaagcctcatacaacaagaatacactatacagtccagtaatcacatta
aatgttctccctgaccctgagaaacctgtacatgtgaatgtcaagtatgacaagaatgtt
gcctttgcagctggaagcatttttcctgatttcatgattagtgtttgttctgaagatgac
aacattattaaaaatataaattcaggaagaatttctatgaaaatgtgggaaggacacagt
actggaaccctaccacaaaatgttacaacatttggctgtaccaaaacaaaagatgacaag
gatgagggatttttttacttcagggatataatggttccagagaaagtgggcatgtacacc
atccagtttgcgtttgccattgacaaaataaatattcttaacagcgaccaggttataatt
gaagtggtgcctaataaaccagcacagttgatgccaagaagtttaccaaatactcctgca
gtttctaatgttcgggctgttggcagtcgaaccctggtcaaggatttgaccctcattata
atggatgaatacaaaaactgcactggtaatgatttagatggaaaaatcatagctcagatt
aaaagttcaattgagaaagatatggaaatccccctgtttcagggtaatacaagtacagtt
gagtttccttttcacaaaggaattgttgaaattgaggatcttgtgctagcagaaaatagt
ccagggagagatagtactgaatatagtcttgtgtttgagccagttataccaactctgaaa
agacatttgaaaccttattatctgtcttttatgttttacaatggttataagagacaacag
cagatggcaatgcttacaaaagaaagagacagactagcccagtcagtacaagtgtacaga
agtatgtttgacaccagtaatcagcttctcgctgaattaaggtgtcaagttcaagaagct
gaagcaaaagagtcccaagtgaagaatgaactgaaagtgcaccagattggcatacctcaa
actaatgttctgcagtttgttgattctctaataaaacaaaagaggactgagcaggaagga
ataatgaaacaacctagaagaacatgtacacttaacaatgatcacaaaggtaatcaagac
gttttgggcaagatttcacacttagcacagattgaagataatgaagttgcaaaggtcata
tcttggcatttggcaagtgatatggactgtgtagtcactctgacaactgctgctgctcgt
cgtatttttgatgaaacccaaggccggcagcaggtattgcctcttgattctgtttataag
aagactcttccagactggaacagcaggcctttacctcacttacgaaatggaaaaaactgt
ttcaagcctattggaaatcctttatttgccaggagtttgctaacatttccagaacatgta
gaggactgccaaacagtgtttgggttgctcttaggcgatacaattattattgacaatttg
gatgctgccaatcattacagaaaagagattgtaaaaatcacacactgcccgactttactg
acgcgagaaggagacagaatccgcagcaatggaaagtttggaggccttcagaacaaagcc
cctccgatggataaacttagaggaatggtttttggagcacctttgccacaacgttattat
gttctctctacgcagctagatctccttcatcagtaccatgcctctgttgtcagacttaat
cacataaagacagaacttaaagttcaagagcattcagttaatactccagaaatgcaaaaa
aggaaagaagagcttgctgagcatgaaaagaatctcaagttaatagagcaacaattaggt
ataagctcatcaggccaatgcaccaaatcatcaaaccagccagaagaacttgatttattt
gacatgccaaatcctccaaaaagaatgcggagagaaataacaaaacgctcttacagttca
gaagaatggatctcagctccacctgcgaagaaacagcagcaaacagcaactgctacatca
gaagttaatggaacatcccgaaaaaagaaaacatag
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integrated database retrieval system
