Varanus komodoensis (Komodo dragon): 123022380
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Entry
123022380 CDS
T07701
Symbol
DDX58
Name
(RefSeq) LOW QUALITY PROTEIN: antiviral innate immune response receptor RIG-I
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
vko
Varanus komodoensis (Komodo dragon)
Pathway
vko04622
RIG-I-like receptor signaling pathway
vko04623
Cytosolic DNA-sensing pathway
vko05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
vko00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
123022380 (DDX58)
04623 Cytosolic DNA-sensing pathway
123022380 (DDX58)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
123022380 (DDX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
vko04054
]
123022380 (DDX58)
Enzymes [BR:
vko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123022380 (DDX58)
Pattern recognition receptors [BR:
vko04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
123022380 (DDX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CARD_2
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
Helicase_C
SWI2_SNF2
AAA_25
AAA_19
MIP-T3
partial_CstF
MCU
Motif
Other DBs
NCBI-GeneID:
123022380
NCBI-ProteinID:
XP_044284010
Ensembl:
ENSVKKG00000009905
LinkDB
All DBs
Position
Unknown
AA seq
918 aa
AA seq
DB search
MTAEQKENLRRCRNYIVTTLNPTYVLCYIEDLLSDETVECIRELKGTPTAAAELLLKSVL
ELTSESWFRAFLDALHAAGYSGLCKAIENWDFQTIENLENYRKFLKKIKPSLLDIDPDHV
LPYMKDCIRQQEWEEIKQAKINNGRAGAAAKLLECLYRTDKENWPKTFQLALDQADYLKE
SELWDMKEGSKNDNDVVMADDNEDSCIVDIQLHYSEEAESDCGSPSAPSNVSRQTTKVPK
EARSYQKELAQPALDGKHTIISAPTGSGKTFVSVMICDHHLHNMPAGRRGKVVFLATKVP
VYEQQKKVFEESFKRSKYTVAGICGENSAMAPIDMLIEENDIIVMTPQILLNCLNDGTLS
SLSLFTLMIFDECHNTTGNHPYSVLMSKYLDLKFEQPNTPLPQIVGMTASLGVGNAKDLK
ETKEYICKICAALNAEVISTVRVHTKELEEIVYKPQKRIKLVSKRPQNRFMDIVVQMMSE
TEALASKLYPLDMLSHIKTRNYGTQKYEQWIVDVQKKCSMLDLPNEEDGRSLFIYTEHLR
KYNDALIINEDARTKDALAYLKEFFENVRRWGLDETEQQLASTFDGYLPELNKVSQDDIN
PKMDDVTYILEEEYHLNPXTRTILFVKTRALAAALKNWITETPELQYLKPDVLMGRGTRN
QGAGMTLPNQKGVLDSFRADGENKILIATSVADEGIDIAQCNLVLLYEYTGNVIKMIQVR
GRGRAKDSKCILVTSKKEQECNEKANVLKEKMMNRAIEEVQSWTEEEFAQKINSLQKELK
RMQDSKKKEPVKRPLPSNKRLLCMKCKAYACDTEDIRVIEGSHHTVLNENFSERYKTAPH
SKPRRYAQFEKRSKLYCNADKCHHDWGIMVKYQAFEDLPIIKIESFLVQDVVTGKRSYFR
KWKEVDFAIKEFSVEDMS
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgactgcggagcagaaggagaacctgcgtcgctgccgaaattatatcgtgacgaccctg
aatcccacttatgtcttgtgctacatagaggacttgctcagcgatgaaacggtggagtgt
atccgagagcttaaggggacgcctactgctgctgcagagttacttctgaaatccgttcta
gagctcacatcagagagttggttccgggcatttttggatgcgctgcatgctgcaggttac
tctggcctttgtaaagcaattgaaaattgggacttccagacaattgagaatctggagaat
taccgaaagtttctgaaaaaaattaagccatctttgttggatattgatcctgaccatgta
cttccctacatgaaagactgcatcaggcaacaggaatgggaagaaataaaacaggctaaa
ataaacaatggcagagcaggagctgcagcaaaacttttagaatgcctgtacaggacagat
aaagaaaactggcccaaaacctttcagctggcactggatcaggctgactatctcaaggaa
agcgaattgtgggacatgaaagaaggtagcaagaatgacaacgacgttgtaatggcagat
gacaatgaggacagctgtatcgtagacatacaattacactattctgaagaagcagaatct
gactgtggaagtccatctgcaccttcaaatgtctctcggcaaaccactaaagtcccaaag
gaagcaagatcctaccagaaggaacttgcccagccggctctcgatggcaaacacaccatc
attagtgcccctactggctctggaaagacctttgtgtctgttatgatctgcgaccatcac
ctccacaacatgcctgctgggcggagaggaaaagtggtcttccttgctactaaagtccca
gtgtacgagcaacagaagaaggtcttcgaggagagcttcaaaagaagcaaatataccgtt
gcaggcatctgtggggaaaatagtgccatggcccctatagatatgctcattgaggaaaac
gacatcattgtcatgacacctcagattcttctgaattgtctcaatgatggaacgctctct
tccctttcactgtttacgctgatgatttttgatgagtgccacaacacaactggaaatcac
ccttacagtgtgctgatgtccaagtacctggaccttaagtttgagcaacccaacacaccg
ttgcctcagattgtaggaatgacagcttctcttggagtcggcaatgccaaggacttgaag
gagaccaaagagtacatttgcaagatttgtgcggcactcaatgctgaagtcatatccacg
gtccgagtgcacacaaaggagctggaggaaattgtctacaagccccaaaaaagaattaaa
cttgttagtaaacgtccccagaatcgctttatggacattgtcgtgcagatgatgtctgaa
accgaagctctggcaagtaaactttaccctttagatatgttgtcccacatcaagactagg
aattatgggactcagaaatatgaacagtggatagttgatgtgcagaagaagtgcagtatg
ctggatctaccaaacgaggaagacggcaggtctcttttcatttacacggagcacctccga
aaatacaacgacgccctcattattaatgaggatgcacgtaccaaagatgcactggcttat
ctgaaagaattctttgagaatgtgcgaagatggggacttgatgaaactgagcagcagctg
gcatcaacatttgatggttatttgccagagctgaataaagtttctcaagatgatattaat
cccaaaatggatgatgttacatatatcctggaagaagaataccacctcaacccttagaca
cgtaccattctctttgttaagaccagagcattggcagctgccttgaagaactggataaca
gaaacccctgaacttcaatacttgaagccagatgtgctgatgggacgtgggactagaaat
caaggggcaggcatgaccctcccaaatcaaaaaggtgtcttggattctttcagagctgat
ggggaaaacaagattctcatcgctacttctgttgccgatgaaggaattgacattgctcag
tgcaaccttgtgctgctttatgagtatacaggcaatgtaatcaaaatgatacaagtcaga
ggtcgtggaagagcaaaagacagcaagtgtatccttgtgaccagcaagaaagagcaggag
tgcaatgagaaggctaacgtgttaaaggagaagatgatgaatagagccattgaggaagtg
cagagctggacggaggaggaatttgcacagaagataaatagcttgcaaaaggaactaaag
agaatgcaagattccaagaagaaggaacctgtgaaaaggccactaccaagtaacaaaagg
ctgttgtgcatgaaatgcaaagcttatgcttgtgatacggaggacatccgagtgattgag
ggatcccaccatactgtcttaaatgagaacttcagtgagcggtataaaacagcacctcac
agcaaaccaaggcgctatgcccagtttgagaaaagatccaagctctactgcaatgcggat
aaatgccaccatgactggggaatcatggtgaagtatcaggcatttgaggacctgcccatt
atcaaaatcgagagctttttggttcaggatgttgtcacagggaagcggtcctatttccgg
aaatggaaagaagttgattttgccataaaagaatttagcgtggaagacatgtcttaa
DBGET
integrated database retrieval system
