Vulpes lagopus (Arctic fox): 121475384
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Entry
121475384 CDS
T07435
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
vlg
Vulpes lagopus (Arctic fox)
Pathway
vlg03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
vlg00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
121475384 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vlg03000
]
121475384 (KDM2B)
04121 Ubiquitin system [BR:
vlg04121
]
121475384 (KDM2B)
03036 Chromosome and associated proteins [BR:
vlg03036
]
121475384 (KDM2B)
Enzymes [BR:
vlg01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
121475384 (KDM2B)
Transcription factors [BR:
vlg03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
121475384 (KDM2B)
Ubiquitin system [BR:
vlg04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
121475384 (KDM2B)
Chromosome and associated proteins [BR:
vlg03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
121475384 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
121475384 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
AppA_SCHIC
Motif
Other DBs
NCBI-GeneID:
121475384
NCBI-ProteinID:
XP_041584550
LinkDB
All DBs
Position
14:complement(28946430..29070601)
Genome browser
AA seq
1204 aa
AA seq
DB search
MDVNTQKGTEMSMSQFVRYYETPEAQRDKLYNVISLEFSHTKLEHLVKRPTVVDLVDWVD
NMWPQHLKEKQTEATNAIAEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKI
FWLIPPTLHNLALYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPV
DSLVFGGNILHSFNVPMQLRIYEIEDRTRVQPKFRYPFYYEMCWYVLERYVYCVTQRSYL
TQEYQRESMLIDAPRKPSIDGFSSDSWLEMEEESCEQQPQEEEKEEEEEEEEEEEGADKV
PKPPADGPPSPTSTPSEDQEAPGKKPKAPAMRFLQRTLSNESEESVKSTTVPTDYPKTPT
GSPATGVSAKWTHLTEFELKGLKALVEKLESLPENKKCVPEGIEDPQALLEGVKNVLKEH
ADDDPSLAITGVPVVTWPKKTPKNRAVGRPKGKLGPASAVKLAANRTTAGARRRRTRCRK
CEACLRTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVE
EEEGKFNLMLMECSICNEIIHPGCLKIKESEGVVNDELPNCWECPKCNHAGKTGKAYKQK
RGPGFKYASNLPGSLLKEQKMNRDNKEGQEPAKRRSECEEAPRRRSDEHPKKVPPDGILR
RKSDDVHLRRKRKYEKPQELSGRKRASTLQTSPGSSSHLSPRPPLGSSLSPWWRSSLTYF
QQQLKPGKEDKLFRKKRRSWKNAEDRMALANKPLRRFKQEPEDDLPEAPPKARESDHSRS
SSPTAGPSTEGAEGPEEKKKVKIRRKRRLPTKELSKELSKELNQEIQKTENSLANENHQP
IKSEPESESEEPKRPLGLCERPHRFSKGLTGTPRELRHQLGPGLRSPPRVISRPPPSVSP
PKCIQMERHVIRPPPISPPPDSLPLDDGAAHVMHREVWMAVFSYLSHQDLCVCMRVCRTW
NRWCCDKRLWTCIDLNHCKSITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLINRLPGLR
DLVLSGCSWIAVSALCSSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQMDNRSKL
RNIVELRLAGLDITDASLRLIIRHMPLLSKLHLSYCNHVTDQSINLLTAVGTTTRDSLTE
INLSDCNKVTDQCLSFFKRCGNICHIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLL
QKLS
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgaacacccagaagggcacggagatgagcatgtcccagtttgtgcggtactat
gagaccccggaggctcagcgggacaagctgtacaatgtcatcagccttgagttcagccac
accaagctggagcacctggtcaagcgtccgactgtggtagacctggtggactgggtggac
aacatgtggccacagcatctgaaggagaagcagacagaagccacgaatgccattgcggag
atgaaatacccgaaagtgaagaagtactgtctgatgagcgtgaaaggctgtttcactgac
ttccacatcgactttggaggcacttccgtttggtaccatgttttccggggtgggaagatc
ttttggctgattcctccaaccctgcacaatttggcactgtacgaggagtgggtgctgtca
ggcaaacagagtgacatcttcctgggagaccgcgtggagcgatgccaaagaattgagctg
aaacagggctacacgtttttcatcccttccggttggattcatgcagtctacacccccgta
gactctctggtatttggcggaaacatcctgcacagctttaacgtgcccatgcagctgcgg
atctatgagatcgaggacagaacacgggtgcagcccaaatttcgttaccccttctactat
gagatgtgctggtatgtcttggaaagatacgtgtactgtgtgacccagcggtcctacctc
actcaggaataccagagagaatccatgcttattgatgccccaagaaagcccagcatagac
ggcttctcatctgattcctggttggagatggaggaagagtcttgtgagcagcagcctcaa
gaggaggagaaggaggaggaagaggaggaggaggaggaggaggagggtgcagataaggtg
cccaagcctcctgccgatggccctccatcacccaccagtaccccttcagaggaccaggag
gcccctgggaagaagcccaaagcacctgccatgaggttcctccaaaggactttgtctaat
gagtcagaagaaagtgtgaagtccacgacggtgcccacagactaccctaagacacccact
ggctcccctgccacgggggtctctgccaagtggacccacctcactgagtttgagctgaag
ggcctgaaagcgctggtggagaaactggaatccctcccagagaacaagaagtgtgtccct
gagggcatcgaggacccccaggcactcctggagggtgtgaagaatgtcctgaaggagcac
gcggatgacgaccccagtctggccattactggggtccctgtagtcacttggccaaagaag
actccaaagaaccgggcggtaggtcggcccaaggggaagctgggcccagcctctgccgtg
aagttggccgccaaccggacaacggcgggagctcgccggcgccggacgcgatgccgcaag
tgcgaggcctgcctgcggaccgagtgtggagagtgccacttctgcaaggacatgaagaag
ttcgggggccccgggcggatgaagcagagctgcatcatgcgacagtgcatcgcgccagtg
ctgccccataccgccgtatgcctggtgtgtggcgaggcagggaaggaagacacagtggaa
gaggaagaaggaaagtttaacctcatgctcatggagtgctccatctgcaatgaaatcatc
caccctggatgccttaagattaaggagtcagagggcgtggtcaacgatgagcttccaaac
tgctgggagtgtccaaagtgtaaccacgccggcaagaccgggaaagcctacaagcaaaag
cgtggccctggctttaagtatgcctccaacctgcccggctccctgctcaaggaacagaag
atgaaccgggacaataaggaaggacaggagcccgccaagaggcggagtgagtgtgaggag
gcgcctcggcgcaggtccgacgagcaccccaagaaggtgcccccggatggcatcctgcgc
cgaaagtcggacgacgtgcacttgaggaggaagcggaaatacgagaagccccaagagctg
agcgggcgcaagcgagcctcgacgcttcaaacgtcccccggttcctcctctcacctctcg
ccgaggccccctctaggcagcagcctcagtccctggtggagatccagtctcacttacttc
cagcagcagctaaaacctggcaaagaagataagcttttcaggaaaaagcggcggtcctgg
aagaacgccgaggaccggatggctctggccaataagcctctccggcgcttcaagcaggag
ccggaggatgacctgcccgaggcaccccccaaggcccgggagagcgaccactcgcgttcc
agctctcccacagctgggcccagcacagagggggcagagggccccgaggagaagaaaaag
gtaaagatacgtaggaaaaggcggcttcccaccaaggagctgagcaaggagctgagcaag
gagctgaaccaagagatccagaagacggagaacagcctggccaacgagaaccaccagccc
atcaagtcagagcccgagagtgagagcgaagagcccaagcggcctctgggcctctgcgag
cgcccccaccgcttcagcaaggggctcaccggcaccccccgggagctgcggcaccagctg
gggcctggcttgcgcagcccaccccgtgtcatctcccggccccctccctccgtgtcccca
cccaagtgcatccagatggagcgacacgtgattcggccaccccccatcagccccccgcct
gactcgctgcccctggatgatggggcggcccacgtcatgcacagggaggtgtggatggcc
gtcttcagctacctcagccaccaagacttgtgtgtctgcatgcgggtctgcaggacctgg
aaccgctggtgctgcgataagcggttatggacctgcatcgatctgaaccactgcaagtcc
atcacacccttgatgctgagcggcatcatccggcggcagccagtctccctggacctcagc
tggaccaatatctccaagaaacagctgagctggctcatcaaccggttgcctgggcttcga
gacttggtgctgtcgggctgctcgtggattgcagtctcagctctctgtagctctagctgt
ccgttactccggaccctggatgtccagtgggtagaaggactaaaggacgcccagatgcgg
gatctcctgtccccacccacagataacaggccaggtcagatggacaatcggagcaagctc
cggaacattgtggagcttcgtctagcaggcctggacatcactgacgcctccctgcggctc
atcatacgccacatgcccctgctctccaagctccaccttagttactgtaatcatgttact
gaccagtccatcaacctgctcaccgctgtgggcaccaccacccgagactccttaactgaa
atcaacctatcagactgcaataaggttactgaccagtgcctgtccttcttcaaacgctgt
ggaaatatctgtcatattgacctgaggtactgcaagcaagttaccaaggaaggctgtgag
cagttcatagctgaaatgtctgtgagcgtccagtttgggcaagtggaagaaaaactcctg
cagaagctgagttag
DBGET
integrated database retrieval system
