Vidua macroura (Pin-tailed whydah): 128811241
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Entry
128811241 CDS
T11570
Symbol
PTPRF
Name
(RefSeq) receptor-type tyrosine-protein phosphatase F isoform X1
KO
K05695
receptor-type tyrosine-protein phosphatase F [EC:
3.1.3.48
]
Organism
vmc Vidua macroura (Pin-tailed whydah)
Pathway
vmc04514
Cell adhesion molecule (CAM) interaction
vmc04517
IgSF CAM signaling
vmc04520
Adherens junction
vmc04910
Insulin signaling pathway
Brite
KEGG Orthology (KO) [BR:
vmc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
128811241 (PTPRF)
04517 IgSF CAM signaling
128811241 (PTPRF)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
128811241 (PTPRF)
09150 Organismal Systems
09152 Endocrine system
04910 Insulin signaling pathway
128811241 (PTPRF)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
vmc01009
]
128811241 (PTPRF)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
vmc04515
]
128811241 (PTPRF)
Enzymes [BR:
vmc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.48 protein-tyrosine-phosphatase
128811241 (PTPRF)
Protein phosphatases and associated proteins [BR:
vmc01009
]
Protein tyrosine phosphatases (PTPs)
Class I PTPs (Classical)
Receptor PTPs
128811241 (PTPRF)
Cell adhesion molecules [BR:
vmc04515
]
Immunoglobulin superfamily
Type II RPTP family
128811241 (PTPRF)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Y_phosphatase
fn3
I-set
Ig_3
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
Fn3_VIN3
Fn3_ROS1
Ig_2
ig
Fn3_PBP1
fn3_2
Interfer-bind
PTP-SAK
Tc-R-P
Ig_VEGFR-1-like_5th
DSPc
Y_phosphatase3
Ig_PDGFR_d4
V-set
C2-set_2
fn3_SORL1
PTPlike_phytase
PTP-NADK
Ig_5
Fn3_PTPRU
Insulin_TMD
DUF3377
ICAM_N
TMEM154
Motif
Other DBs
NCBI-GeneID:
128811241
NCBI-ProteinID:
XP_053840658
LinkDB
All DBs
Position
9:22000677..22375796
Genome browser
AA seq
1912 aa
AA seq
DB search
MVPNFCIPVFTVPAAILCCLMLPLAGADSKPTFMKAPEDQIGISGGVASFVCQATGEPKP
RITWMKKGKKVSSQRFEVIEFDDGSGSVLRIQPLRVHRDEAIYECTATNSVGEINTSAKL
TVLEEDHLPAGFPTIDMGPQLKVVEKARTATMLCAASGNPDPEISWFKDFLPVDTATSNG
RIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVRVRRVAPRFSIPPSNHE
VMPGGSVNLTCVAVGAPMPYVKWMAGVEELTKEDEMPVGRNVLELNNIMQSANYTCVAIS
SLGMIEATAQITVKALPKPPTEPLVTETTATSVTLTWDSGNSDPISYYVIQYKPKSLEGQ
FQEVDGVATTRYSIGGLSPFSEYEFRVIAVNNIGRGPPSELVEARTGEQAPSSPPLKVQA
RMLSASTMLVQWEQPEEPNGQIRGYRVYYTTDPHLPLSMWQKHNTDDSHLTTVGSLITGT
TYSIRVLAFTSVGDGPPSDIIQVKTQQGVPAQPADFQAEAESDTRILLTWLPASQERITK
YELLYWEGEDGTQQKVEFDPTSSYAVEGLKPDTLYKFRLGARSELGVGVYTPTVEARTAQ
STPSAPPQEVECVSTSSTTIRVSWVPPPAQSRNGVITQYSIAYQAVEGDDNTKHVVDGIG
REHSSWEIKDLEKWTEYKVWVRAHTDVGPGPESIPVHVRTDEDVPSAPPRKVEVESVNST
AIRVSWKLPISNKQHGQIRGYQVTYVKLENNEPRGQPVIKDVMLSEAQWRAEDSVDHETV
IGGLLPETTYSVTVAAYTTKGDGARSKPKVITTTGAVPGKPTMMISTTAMNTALIQWHPP
KEMVGELLGYRLQYRRLDEEKMNTIDFGKRDHHYTVTNLHKGATYLFKLSAKNRAGPGEE
FEKEITTAEDVPSGFPQNLRVVGLTTSTTEVAWDPPVLAERNGKIVNYTVVYRDINSQQD
LANITKDTSITLTNLKPDTTYDIKVRARTNKGAGPLSPSIQSRTMPVEQVFAKNFRVNAV
MKTSVLLSWEVPDSYKSAVPFKILYNSQSVEVDGHSMKKLISDLQPDTDYSFVLMNRGSS
AGGLQHLVSIRTAPDVLQSKPIATNKYIQEGKFTLTLPKVQTTVPVRWYYIVVVPADQST
STLTARWRTPDEMELDQLLEAISQGSQSRRQRRQADRLKPYIAAQVDVLPETFTLGDEKN
YKGFYNKPLSQDLSYRCFVLASLEDGDTKRYAASPYSDEIVMEVASAKQQDEPEMLWVMG
PVLAVILIIIIVIAILLFKRKRAHSPSSKDEHSIGLKDSLLAHSSDPVEMRRLNYQTPGA
SVPCCPNISSMRDHPPIPVTDLADNIDRLKANDGLKFSQEYESIDPGQQFTWENSNLEVN
KPKNRYANVIAYDHSRVILTSIDGVPGSDYINANYIDGYRKQNAYIATQGPLPETLSDFW
RMVWEQRTATIVMMTRLEEKSRVKCDQYWPSRGTETYGMIQVVLLDTVELATYTVRTFAL
YKNGSNEKTELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPTDAGPMVVHCSAGVGRT
GCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYIFIHEALLEAATCGNTEV
PARNLFAHIQKLTQVPPGESVTEMELEFKMLANSKAHTSRFISANLPCNKFKNRLVNIMP
YELTRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTEDFWRMLWEHDSTIV
VMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTI
RQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIV
LERMRYEGVVDMFQMVKTLRTQRPAMVQTEDQYQLCYRAALEYLGSFDHYAT
NT seq
5739 nt
NT seq
+upstream
nt +downstream
nt
atggtgcctaacttctgtatcccagtattcactgtgccagcagccatcctctgctgcttg
atgctgcctttagcaggagcagacagcaagccaacgtttatgaaggctcctgaagatcag
attgggatttctggaggagtggcctcttttgtgtgtcaggcaacaggagagcccaaacct
cgtatcacgtggatgaagaaggggaagaaagtcagttctcagcggtttgaggttatcgag
tttgatgatggatcaggatcagttctgcggatacagcccctgcgtgtccatcgagatgag
gctatctatgagtgcacagccaccaacagtgtgggggagataaacaccagtgccaagtta
acagtgttagaagaagaccacctcccagctggcttcccaaccattgacatgggcccgcag
ctgaaggtggtggagaaggcccgcacagccacgatgctctgtgctgccagtggtaaccct
gatcccgaaatctcctggttcaaggacttcctgcccgtggatactgccaccagcaatggg
cgaatcaagcaactccgctcgggagctctgcaaatagagaacagtgaggagtcagaccaa
ggcaaatacgaatgtgttgcaaccaacagcgcaggaacccgctactctgccccagccaac
ctttatgttcgagtgcggcgtgttgctcctcgattctctatccctccgagcaaccacgag
gtgatgcctggggggagcgtgaacctcacgtgcgtggcagtaggtgctccaatgccctat
gtaaagtggatggctggtgtggaggaactgaccaaagaagatgagatgcccgtcggtagg
aatgtcctggagctgaataacatcatgcagtctgccaactacacctgcgtggccatctct
tcccttggcatgattgaagccacagcccagatcactgtcaaagcactgccaaaacctcca
acagagccattagtgactgaaacaacagctaccagcgtgaccctcacctgggattcaggc
aactctgaccccatttcatattacgtcatccagtacaagcccaaatccctggagggccaa
ttccaggaggtggatggtgtggcaacaacccgctacagcataggtgggctcagccccttc
tcagagtacgagttccgggtcatcgcagtcaacaacattggcaggggtccccccagtgaa
ctggtcgaggcccggacaggagagcaagctccttcaagtccccccctcaaagtccaggca
cggatgctgagtgccagcaccatgctggtgcagtgggagcagccggaggagcccaatggg
cagatccgagggtaccgcgtgtactacaccaccgacccacacctgcctttgagcatgtgg
cagaagcacaacaccgacgacagccacctcaccaccgtgggcagcctcatcaccggcacc
acctacagcatccgcgtcctggccttcacttcggtgggcgacgggcccccctcggacatc
atccaggtcaaaacacagcaaggggttcctgcccagccagctgacttccaggcagaagca
gagtctgatacccgcatcctgttgacatggctgcctgcctctcaggaacgcattactaaa
tatgagctgctgtactgggaaggggaggatggcactcagcaaaaggtggagtttgaccca
acctcctcatatgccgtggaaggtctcaaaccagacacattgtataagttccgtctgggt
gcccgatcagagctgggggtaggagtttacacccccacagtcgaagccagaactgcccaa
tccaccccctccgccccaccccaagaagtcgagtgtgtaagcaccagctccaccaccatc
cgggtaagttgggtgccaccgcccgcccagagccgcaatggggtcatcacccagtactcc
attgcctaccaggcagtggaaggagatgacaacaccaagcatgtggtggatggcattgga
cgagagcattccagctgggagatcaaggacctggagaaatggacagaatacaaggtgtgg
gtaagggctcacaccgatgtggggccaggaccggagagcatccccgtgcacgtgcgcact
gacgaggatgtgcccagtgccccaccgagaaaggtggaggtggagtctgtgaattcgact
gccatccgggtgagctggaagctgcccatctccaacaagcagcatgggcagatccgcggg
tatcaggttacttacgttaagctggaaaacaacgagccccgagggcagccagtgatcaag
gacgtcatgctgtcagaagcacagtggagagctgaggactccgtcgaccatgagacagtc
attggaggcctgctgccagaaaccacctactccgtcacagttgctgcctacaccaccaaa
ggagatggtgcccgcagcaagcccaaagtcatcaccaccacaggggcagtcccggggaag
cccaccatgatgattagcacgacagccatgaacacagccctcatccagtggcacccaccc
aaggagatggtaggggagttgctgggttaccggctgcagtacagacgtctggatgaggaa
aaaatgaacacgatagacttcgggaagagagaccatcactacacagtgaccaacctgcac
aagggggccacgtacctcttcaagttgtctgccaagaacagagctggcccaggagaggag
tttgagaaggagatcacaactgccgaagatgtgccaagtggcttcccacagaacctgcgt
gtggtgggtctcaccacttccaccacagaagttgcttgggaccccccggttttggcagaa
aggaacggcaagatcgtcaactacacagtggtatacagggacataaatagccagcaggat
ctggctaacatcaccaaggacacgagtatcactttgacaaatttgaaacctgataccact
tacgacatcaaagtgagggcccgcaccaataagggggctgggccactcagccccagcatc
cagtcccggaccatgcctgtagagcaagtgtttgctaagaacttccgtgtcaatgccgtc
atgaaaacatctgtgttgctgagctgggaagtgcctgactcctataaatctgcagtgcct
tttaagattctgtacaatagccagagtgtggaggtggacggccactcaatgaagaagctc
ataagtgacctccagccagacacggactattcttttgtgctaatgaaccgtgggagcagt
gcaggggggctccagcacctcgtctcaatccgcaccgctcctgatgtcttgcaaagcaaa
cccatcgccacaaacaagtacatacaggaaggaaaattcacgctaactcttcccaaagtg
cagaccactgtgccagttcggtggtactacatcgtggttgtgccagcagaccagagcacc
agcaccctgactgctcggtggcggacgcctgatgagatggagctggaccagctgctggag
gccataagccaggggagtcagagcaggcggcagcgacgccaggcagacagactcaagccc
tacattgctgctcaagtggatgtgctgcctgagaccttcaccctgggtgatgagaagaac
tacaaaggtttctacaacaagcctctgtctcaagacctgagctatcgctgcttcgtgctg
gcctcgctggaggatggggacacgaagagatatgcagccagcccctactcggatgagatt
gtgatggaagtggcatcggcgaagcagcaggatgaaccagagatgctgtgggtgatggga
cccgtcctggctgtgatattaatcatcatcattgtcattgccatacttctcttcaaaagg
aaaagggcacattccccctcttccaaggatgagcactccatcggcctgaaggactcactc
ttggcccactcatctgacccagtggagatgaggcggctcaactatcagactccaggtgcc
agtgtcccctgttgcccgaatatctcaagcatgcgtgaccacccccccatccccgtgacc
gacctcgctgacaacatcgaccggctcaaggccaacgatgggctgaagttctcccaggag
tacgagtccattgatcctgggcagcagttcacctgggagaactccaacctggaagtgaat
aaaccgaaaaaccgctatgcaaatgtgatagcctatgaccactcacgtgtcatcctgact
tccatcgatggggtcccaggcagtgattacatcaatgccaattacattgatgggtatcgg
aagcagaacgcctacatcgccacgcagggaccgctgccagaaaccctcagcgacttctgg
aggatggtgtgggaacagagaacagcaactatagtcatgatgaccaggctggaggagaag
tccagggtaaagtgtgaccagtactggccgagccggggtacagaaacctatgggatgatc
caggtggtcctgctggatacagtcgagctggcgacttacaccgtccgcacctttgcgctg
tacaagaatggctccaatgagaagacagagctgagacagttccagttcatggcttggccc
gatcacggggtcccagaataccccaccccaatcctcgctttcctgcgacgggtcaaggcc
tgtaacccaacagatgctgggcccatggttgtgcattgcagtgctggcgtgggccgaacc
ggctgcttcatcgtcatcgacgccatgctggagcggatgaagcacgagaagaccgtggac
atctacggccacgtgacatgcatgcgctcccagcgcaactacatggtgcagacggaggac
cagtacatcttcatccatgaggccttgctggaggccgccacgtgcggcaataccgaggtg
cccgcacgcaacctcttcgcccacatccagaagctgacccaggtgccaccaggcgagagc
gttactgaaatggagctggaattcaagatgctggccaattctaaagcacatacctcacgt
ttcatcagtgccaacctcccgtgcaacaaattcaagaaccgcctcgtgaacatcatgccg
tatgagctgacaagagtctgcctgcagcccatccggggtgttgagggctctgactacatc
aatgccagcttcatagatggctacaggcagcagaaggcctacatcgccacgcagggacca
ctggccgagaccacggaggatttctggcggatgctctgggagcacgactccaccattgtg
gtgatgttgacaaagctgcgtgagatgggccgggagaagtgccatcagtactggcctgca
gagcgctctgcccggtaccagtactttgtggtggaccccatggcagagtacaacatgcca
cagtacatcctccgggagttcaaggtgacggatgccagggacggccagtcacggaccatc
cgccagttccagttcacagactggcctgagcagggagtgccaaagacaggagagggtttc
attgacttcattgggcaggtgcacaagaccaaggagcagtttgggcaggatgggcccatc
acagtgcactgcagtgctggggtcgggcgcaccggcgtgttcatcacactcagcattgtg
ctggagaggatgcgctacgagggcgtggtggacatgttccagatggtgaagaccttgcgg
acacagcggccggccatggtgcagacagaggaccagtaccagctgtgctacagagccgca
ctggagtaccttggcagcttcgaccactatgcaacgtaa
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integrated database retrieval system
