Vibrio mimicus: AL543_13990
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Entry
AL543_13990 CDS
T04381
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vmi
Vibrio mimicus
Pathway
vmi03030
DNA replication
vmi03410
Base excision repair
vmi03420
Nucleotide excision repair
vmi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vmi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AL543_13990 (ligA)
03410 Base excision repair
AL543_13990 (ligA)
03420 Nucleotide excision repair
AL543_13990 (ligA)
03430 Mismatch repair
AL543_13990 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vmi03032
]
AL543_13990 (ligA)
03400 DNA repair and recombination proteins [BR:
vmi03400
]
AL543_13990 (ligA)
Enzymes [BR:
vmi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AL543_13990 (ligA)
DNA replication proteins [BR:
vmi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AL543_13990 (ligA)
DNA repair and recombination proteins [BR:
vmi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AL543_13990 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AL543_13990 (ligA)
MMR (mismatch excision repair)
DNA ligase
AL543_13990 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AL543_13990 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AMG04023
LinkDB
All DBs
Position
2:1654181..1656193
Genome browser
AA seq
670 aa
AA seq
DB search
MSNVEQRLIELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLDLEAANPELITPDSPSL
RVGGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRIPAVQQSHFCCEPKLDGLA
VSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGSDFPVRLEVRGEVFMPKAG
FEALNARALKKGEKQFVNPRNAAAGSLRQLDSRITAQRPLAFYAYSVGIIDGGELATSHY
QRFLQLKRWGLPICPETKPVTSLIEVKAFYQEILQRRQSLAYEIDGVVIKVDDIQLQERL
GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN
ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPIDAKPIVFPACCPVCQSEIERIEG
EAVARCTGGLICQAQRKEALKHFVSRKAMDVDGLGDKVIEQLVDREMVSTPADLFRLRAG
ELTILERMGPKSAQNVIDALNKAKQTTLPRFLYALGIREVGEATALNLAQHFLTLDAIVQ
ASMDQLIEVPDVGGVVASHLHAFFAQSRNQQVIAELIELGITWPAMAVASSIAADSALAG
KVVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLSKAAELGIQVL
DEQALIDFLK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatgtagagcaacgattaattgaactaagacaaaccctgcatgagcatggtgtc
cgttattatgtagaggatgctcccacgattccggatgcagaatatgaccgtctaatgcgc
gagctgttggatttagaagctgcaaatccggaattgataactccagactccccaagtctg
cgtgttggtgggcgtccgctagatggatttgagtctgtcatacatgaaataccgatgctt
tcacttgataacgcttttgatgatgctgaattagatagcttttatcgtcgtatgacagat
cgtattccggcagtacaacaaagtcatttttgctgtgagcctaaattagatggtttggcg
gtgagcttactgtatgagaacggtgtgttgactcgtgctgcaactcgaggtgatggtgca
actggcgaaaatatcacagaaaatgtgcgtacgattaaatcgatcccattgcgtctgcaa
ggctcagattttcctgtgcgtctcgaagttcgtggtgaagtgtttatgccgaaagcgggg
tttgaagcactgaatgctagagctcttaaaaaaggtgaaaagcagtttgttaaccctcgt
aatgctgctgcaggaagcctacgtcaattagattctagaatcactgctcagcgtccattg
gctttttatgcctacagtgttgggatcatcgacgggggagagttagcaaccagtcactat
caacgttttttacaactcaaacgttggggcttgcctatttgtcctgaaactaaaccagtg
acttctctcatcgaagtgaaagctttttaccaagagatcttgcagcgtcgccaatctttg
gcctacgaaattgatggtgttgtgatcaaagttgacgacattcaattgcaagagcgattg
ggttttgttgctagagcgccgcgctgggcgattgcctataaatttccagctcaagaagag
ctaactcttttaaatgacgtcgaatttcaagtagggcggacgggggccattacaccagtg
gcgaagttggagcctgtctttgtcggtggggtaacggtaagtaacgcgactttacacaat
gccgatgaaattgaacgtttaggggtaatggttggtgatacggtggtgatcaggcgtgca
ggtgacgtcattccacagatcgtttctgtcgttttagagcgccgacctatagatgcaaaa
ccaattgtgttcccagcttgctgccctgtttgccaatctgaaattgagcgtatagaaggt
gaagctgttgcaagatgtactggtggattaatttgtcaggcacagcgcaaagaggcgttg
aaacattttgtatcccgtaaagccatggatgttgatggtttgggagataaagtgattgag
caattagttgatcgtgaaatggtgagtacaccggctgatttgttccgtttaagagcggga
gaattgacgattctcgagcgaatggggccaaagtcagcgcagaacgtgattgatgccttg
aataaagctaaacagactactttgccaaggtttttatacgctctgggtattcgcgaagtg
ggtgaggcaacagctctcaatctggcacaacatttcttaactttagatgcgattgtgcag
gcgagtatggatcagttgattgaagtacctgatgttgggggagtggttgcgagtcattta
catgctttctttgctcagtcacgtaaccaacaagtgatcgcagagttgattgagttaggc
attacctggccagctatggctgtggcttcatcgatcgcggctgattctgccttagcgggt
aaagtggtggtattaacaggaagttttacacaactatcacgtaatgatgcgaaagcagca
cttcaagctcttggagctaaagtcactgggagtgtatcgaaaaacacggatatcgttttt
gctggagaagctgcggggtccaagttaagtaaagctgctgagttaggaattcaagtttta
gatgagcaagcactaatcgatttcttaaagtaa
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integrated database retrieval system
