Vibrio metoecus: QYQ96_09145
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Entry
QYQ96_09145 CDS
T09673
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vmt
Vibrio metoecus
Pathway
vmt03030
DNA replication
vmt03410
Base excision repair
vmt03420
Nucleotide excision repair
vmt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vmt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QYQ96_09145 (ligA)
03410 Base excision repair
QYQ96_09145 (ligA)
03420 Nucleotide excision repair
QYQ96_09145 (ligA)
03430 Mismatch repair
QYQ96_09145 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vmt03032
]
QYQ96_09145 (ligA)
03400 DNA repair and recombination proteins [BR:
vmt03400
]
QYQ96_09145 (ligA)
Enzymes [BR:
vmt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QYQ96_09145 (ligA)
DNA replication proteins [BR:
vmt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QYQ96_09145 (ligA)
DNA repair and recombination proteins [BR:
vmt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QYQ96_09145 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QYQ96_09145 (ligA)
MMR (mismatch excision repair)
DNA ligase
QYQ96_09145 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QYQ96_09145 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
WKY92446
LinkDB
All DBs
Position
1:complement(2012082..2014094)
Genome browser
AA seq
670 aa
AA seq
DB search
MSNVEQRLTELRQTLHEHGTRYYVEDAPTIPDAEYDRLMRELLDIEAQHPELITPDSPSL
RVGGRPLDGFDSVIHEIPMLSLDNAFDDAELESFYRRMTDRISAVQQSHFCCEPKLDGLA
VSLLYENGVLTRAATRGDGAAGENITENVRTIKSIPLRLQGSDFPRRLEVRGEVFMPKAG
FDALNARALKKGEKQFVNPRNAAAGSLRQLDSRITAQRPLAFYAYSVGIIEGGMLASSHY
QRFLQLKSWGLPICPETKLVASLSEVKDFYQDILQRRGALAYEIDGVVIKVDDITLQERL
GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN
ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPVDAKTILFPTHCPVCQSDIERIEG
EAVARCTGGLVCQAQRKEALKHFVSRKALDVEGLGDKVIEQLVDREMVATPADLFRLRAG
ELTILERMGPKSAQNVIDALHKAKQTTLPKFLYALGIREVGEATALNLAQHFLTLEAIAL
ATMEQLIEVSDVGNVVAGHLHAFFAQSRNQKVIAELIELGVTWPAMAAISSTGADSVLSG
KVVVLTGSFNQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGVAVM
DEQALIELLK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatgtagagcaacgattaaccgagctaagacaaaccctgcatgagcatggtacc
cgttattacgtcgaagatgcaccgaccattccggatgcagaatatgaccgcttaatgcgt
gaactgctggatatagaagcgcaacaccctgagttgattactcctgactcacccagcttg
cgtgtgggtgggcgtccacttgatgggtttgactctgtcatacatgagattccgatgctc
tctcttgataacgcgtttgatgatgctgagttagagagtttttatcgtcgcatgacagac
cgtatttctgctgtgcaacaaagccatttctgttgtgaacctaaattagatggtttagcg
gtaagtttactgtatgaaaatggtgtactgactcgtgcggcaacccgaggcgatggcgct
gctggggaaaatatcaccgaaaacgtgcgtacgattaagtctattccgctgcgcttacaa
ggttcggattttcctcgccgcttagaggtgcgtggtgaagtttttatgcccaaagcaggg
tttgatgcccttaatgcccgagcgcttaaaaaaggtgaaaaacagtttgttaacccgcgt
aatgccgccgcaggaagtttgcgtcagctagattctcgaattacggctcaacgtccatta
gcattttacgcttacagtgtcggtattatcgaaggtggaatgttggcatcaagccattat
caacgttttctacagctaaaaagttggggcttaccgatttgccctgaaaccaagcttgta
gcctcgttatcggaagtaaaagatttttaccaagatatattgcagcgtcgaggagctctt
gcttacgaaatagatggtgtcgtcatcaaagtggatgacattacattgcaagagcgtcta
ggttttgtggctcgtgcacctcgttgggcgattgcttataaatttcctgcgcaagaagag
ttaaccttgcttaacgatgttgagtttcaagtcggccgtacgggagcgatcacccctgtg
gcgaagttggaacctgtctttgtgggtggtgtcacggtgagtaatgccacattacataat
gccgatgagattgagcgtttgggggtgatggtcggtgatacggtagtgatccgtcgtgct
ggggatgttatcccacagattgtttccgttgttttagaacgccgtccagttgacgctaaa
acaattttgttcccgacgcattgccctgtatgtcagtctgatattgaacgtatagaaggt
gaggcggttgctcgatgtacaggtggattagtttgtcaggcacaacgtaaagaagcgttg
aagcattttgtctcgcgtaaagcacttgatgttgaaggtttaggcgacaaagtgattgaa
caactggtcgatcgcgaaatggtggctacacctgccgatttattccgtttaagagctggc
gaactgacgattctagaacgtatgggccctaaatcagcacaaaacgtgattgatgctttg
cataaagccaaacaaacaaccttacctaagttcttatatgcactgggtattcgtgaagtt
ggagaagcaaccgcacttaatctggctcagcactttttgactcttgaagcgattgcactg
gcaaccatggagcaactgattgaagtttcagatgttggtaacgttgtcgcaggtcactta
catgctttctttgcgcaatcacgtaatcaaaaagtgattgctgaactgattgaactcggt
gttacatggccagcaatggcggccatttcatctactggggcagattctgtattgtctggg
aaagttgtggtattgacgggcagcttcaatcaactatctcgtaacgatgctaaagctgca
ctacaagctcttggggcgaaagtgacagggagtgtttcaaaaaatacggatattgtgttt
gcaggtgaagccgctggctctaagctagcgaaagcaacagagttgggtgttgcagtgatg
gatgaacaagcactgattgaactcttaaaatag
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