Vibrio natriegens: PN96_09495
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Entry
PN96_09495 CDS
T04636
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vna
Vibrio natriegens
Pathway
vna03030
DNA replication
vna03410
Base excision repair
vna03420
Nucleotide excision repair
vna03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PN96_09495 (ligA)
03410 Base excision repair
PN96_09495 (ligA)
03420 Nucleotide excision repair
PN96_09495 (ligA)
03430 Mismatch repair
PN96_09495 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vna03032
]
PN96_09495 (ligA)
03400 DNA repair and recombination proteins [BR:
vna03400
]
PN96_09495 (ligA)
Enzymes [BR:
vna01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PN96_09495 (ligA)
DNA replication proteins [BR:
vna03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PN96_09495 (ligA)
DNA repair and recombination proteins [BR:
vna03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PN96_09495 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PN96_09495 (ligA)
MMR (mismatch excision repair)
DNA ligase
PN96_09495 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PN96_09495 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
DNA_pol_lambd_f
HHH
5_3_exonuc
DUF4874
Motif
Other DBs
NCBI-ProteinID:
ALR16207
UniProt:
A0AAN1CV64
LinkDB
All DBs
Position
1:complement(2086601..2088613)
Genome browser
AA seq
670 aa
AA seq
DB search
MSESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAQHPDLVTVDSPS
QRVGGKPLSEFSEVQHEVPMLSLDNAFDDSELDSFHKRAQDRVGNQSVKQYCCEPKLDGL
AVSLLYENGVLVQAATRGDGTTGENITENVRTINAIPLKLRGNDWPERLEVRGEVFMPKA
GFEKLNELARQKGDKVFVNPRNAAAGSLRQLDSRVTASRPLSFYAYSVGVVQGAELASSH
YERFLQIKSWGLPMCPETKRVDSLADVKAYYQDILQRRDALPYEIDGVVIKIDDIAIQER
LGFVARAPRWAIAYKFPAQEEITTLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLH
NADEIERLQVKIGDQVVIRRAGDVIPQVVSVIRERRPENAREIVFPSLCPVCDSHVERIE
GEAVTRCTGGLVCQAQRKQALKHFVSRKALDVDGLGDKVIEQLVDREMVETPADLFKLSA
GILTVLERMGPKSAQNIVNALDKSKLTTLPRFLYSLGIREVGEATAANLAQHFKTLEAIQ
VATEEQLIEVQDIGVIVAKHITTFFGEEQNQAVVKDLLEQGIHWPEISAPEQGVELPLEG
KTVVLTGTLSQLGRSEAKEALQALGAKVTGSVSKKTDILFAGENAGSKLAKAQDLGIEIK
TEQDLLDLMN
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaatcagtacttcaacgactagaagaattaaaagagtcgttgcattaccatgcc
gttcgttactacgtggaagataacccagagattccggatgctgaatatgatcgactcatg
cgtgaattgctggatattgaagctcaacacccagacctagttacagtagattcgcctagc
cagcgtgttggtggaaaacctttatctgaatttagcgaagttcagcatgaagttccgatg
ttgtcgttagacaatgcctttgacgacagcgagctggacagcttccacaaacgagcacaa
gacagagttggcaatcaaagtgttaaacaatactgttgtgagccaaaactggatggctta
gcagtaagcctattgtacgaaaacggtgttctcgtccaggccgcgacgcgtggtgacggt
acaaccggtgaaaacattactgaaaacgttcgtaccatcaacgccatccctctcaaatta
agaggcaatgattggcctgagcgtcttgaagttcgtggtgaagttttcatgcctaaggcg
ggttttgaaaaactcaacgaactggctcgtcaaaagggagacaaagtttttgttaaccct
cgtaatgccgcagctggtagcttacgtcagttagattcacgtgttaccgcttcgcgtccg
cttagtttctatgcctacagtgtgggtgttgttcagggagcggaattagcgtctagtcac
tatgaacgctttctgcaaattaagtcatgggggctgccaatgtgccctgagactaagcgt
gtagatagcctggcggatgtcaaagcgtactaccaagatattttacagcgacgtgatgct
ttgccatatgagattgatggtgttgttataaaaatcgacgatattgcgatccaagaaaga
ctgggcttcgttgctcgagctcctcgctgggctattgcttataagttcccggcgcaagaa
gaaatcaccacattgaatgatgtggaatttcaggtagggcgtactggtgcgattacgcca
gtcgctaaactggaacctgtttttgtcggcggtgtgacggtaagtaatgctactctgcat
aacgctgatgaaattgaacgtcttcaagtaaaaatcggtgatcaagttgtgatccgccgt
gcaggtgacgtgattccccaagttgtttcagtgatccgcgagcgtcgtccagaaaacgcg
cgcgagattgtgtttccatcgctctgtcctgtttgcgattcgcatgtcgaacgtattgag
ggagaggccgtgactcgctgtacgggtggtttggtttgccaagcgcagcgtaaacaagct
ctaaaacatttcgtgtcgcgtaaagcgttagatgtcgatggtcttggcgataaagtgata
gaacagcttgttgatcgagaaatggtcgaaactccagcggatctgtttaagttgtctgca
ggcattttgacggttttagagcgtatggggccaaaatcagcgcaaaacattgtgaatgcg
ttagacaagtcgaagttaaccacattgcctcgctttttatactcactaggcattcgagaa
gtcggcgaagcgacagccgctaacttagcgcagcatttcaaaacgctagaagcgatccag
gttgcgacagaagaacagttgattgaagttcaggacatcggcgtcattgttgctaagcat
atcaccactttctttggtgaagagcaaaaccaagcagtagtgaaagacttgctagagcaa
ggtattcactggccagaaattagtgctcctgagcaaggtgttgaactgccgttagaaggt
aaaacggttgtactaactggtactctttctcaactagggcgatccgaagcaaaagaggca
ctacaggcgctgggtgctaaagttaccggcagtgtttcgaagaaaacggatattttattc
gcaggtgaaaatgcgggttctaaattagcaaaagcgcaagacttgggaattgaaattaaa
accgaacaagacttactcgacttaatgaattaa
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integrated database retrieval system
