Virgibacillus necropolis: CFK40_19250
Help
Entry
CFK40_19250 CDS
T04976
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vne
Virgibacillus necropolis
Pathway
vne03030
DNA replication
vne03410
Base excision repair
vne03420
Nucleotide excision repair
vne03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CFK40_19250
03410 Base excision repair
CFK40_19250
03420 Nucleotide excision repair
CFK40_19250
03430 Mismatch repair
CFK40_19250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vne03032
]
CFK40_19250
03400 DNA repair and recombination proteins [BR:
vne03400
]
CFK40_19250
Enzymes [BR:
vne01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CFK40_19250
DNA replication proteins [BR:
vne03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CFK40_19250
DNA repair and recombination proteins [BR:
vne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CFK40_19250
NER (nucleotide excision repair)
GGR (global genome repair) factors
CFK40_19250
MMR (mismatch excision repair)
DNA ligase
CFK40_19250
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CFK40_19250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
RNA_pol_A_CTD
HHH
RNA_ligase
Nlig-Ia
BRCT_2
HHH_8
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
ASN06996
UniProt:
A0A221MH69
LinkDB
All DBs
Position
complement(4053606..4055609)
Genome browser
AA seq
667 aa
AA seq
DB search
MDKQQAQEKIAALSELLNQYNYDYHVLDKPSVPDAEYDQKMQELRGWEEKYPELVTPESP
TQRVGGEPLDAFQKVQHNVPMLSLGNAFNEGDLRDFERRAIGGTDTKLSFVCELKIDGLA
VSLTYKNGKFVRGATRGNGTTGEDITSNLRTVKSIPLAIKEKETIEIRGEAFMPHKSFLA
LNKSRVENEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFLYGVGDWEAKPISSHSERLM
YLKELGFKTNPEWKKCETIEEVIDYVTFWEAERPNLSYEIDGIVIKVDNLDQQEELGFTA
KSPRWAIAYKFPAEEVITTLHDIELSVGRTGVITPTAILEPVKVAGTTVKRASLHNEDLI
RAKDIKLGDTVVIKKAGDIIPEVIRVLEENRTGEEKDFHMPEACPACDSELVRLEEEVAL
RCINPNCPAQLKEGLIHFVSRNAMNIDGLGEKVIIQLFQEKLIHTIADLYRLKRDDLLKL
ERMGEKSVDNLLQAIETSKQNSLEKLLFGLGVRFVGAKAAKTLAAHFETMAKLQHATYED
LISIDEIGEKMADSIAQYFSEEEVVDLLQELNDLHINMTYKGPKKQDIVEDTVFSGKTVV
LTGKMETYSRSEAKAAIEQLGGSVTGSVSKKTDYLIAGVDAGSKLDKAEELGITIWSEEQ
LREVLGN
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
gtggataaacagcaagcacaagaaaaaattgctgcattaagcgaattgctaaatcaatat
aactatgattatcatgttttagacaaaccgagtgttcctgatgctgaatatgatcaaaaa
atgcaagaactacgtggttgggaagaaaagtatccagaacttgttacacccgaatctcca
acgcaacgtgtcggcggggagccacttgatgcattccaaaaagtacaacataatgtaccg
atgcttagcttaggaaatgcctttaatgaaggtgatttgcgtgattttgaacggcgtgct
atcggtggaacagatacgaagctatcatttgtttgtgaattgaaaattgatggattggct
gtatctcttacctataagaatggcaaatttgttcgtggtgccacgcgtggaaatggtact
accggtgaagatattacgagtaacctaagaacggttaaaagtattccattagccattaaa
gaaaaagaaacaattgaaattcgtggtgaagcttttatgccacataaatcctttttggca
ttaaataaaagccgtgtagaaaatgaagaagaaccattcgcgaatccaagaaacgccgct
gcaggatctttgcgtcaattagatccaaaaatagctgcaaagcgtaatttagatatcttt
ttatatggtgttggggattgggaagctaagccaatctcctcacacagtgaacgattaatg
tatttgaaagaacttggattcaagacaaacccggaatggaaaaaatgtgaaacgatagaa
gaagtaattgattatgtaacgttttgggaagctgaacgtccaaatttaagttacgaaatt
gatggtatagtcattaaagtggataatctagatcaacaagaagaacttggttttacagca
aagagcccacgatgggctatcgcatacaaattcccagcagaagaagttattacgacatta
catgatattgaattaagtgttggtcgtacaggtgttattactccaactgcaattttagag
cctgtaaaagttgcgggtacaacggtaaaacgtgcttcgttacataatgaagatttaatc
cgtgcaaaagatataaaacttggtgatacagtagttattaagaaagccggggacattatt
ccagaagtaatacgtgtgttggaagagaatcggactggtgaggaaaaagatttccatatg
ccagaagcctgtccagcttgtgatagtgaacttgtccgtttggaagaagaagtcgcatta
aggtgcattaatccgaactgtccagcacaattaaaggaaggattaattcattttgtctcg
cgtaatgcgatgaatatcgatggcctaggggaaaaggtaatcattcaattattccaagaa
aaactgatccacaccatcgccgatttatatcggttgaaacgtgatgatttgctgaaactg
gaacgaatgggtgaaaaatctgtagataaccttcttcaggcaattgaaacatcgaaacaa
aattcattggagaagttactctttggccttggggttcggttcgtgggggcaaaagcagcc
aagactttggcagcccattttgagacgatggcaaaattacagcatgcaacgtatgaggac
cttattagcattgatgaaataggcgagaaaatggccgattcgattgcacagtatttttca
gaagaagaagtagtagatcttttacaagagttaaacgatcttcatataaacatgacctat
aaaggtccgaaaaagcaagatatcgtagaggatacggttttttctggaaagaccgttgta
ttaacggggaaaatggaaacctactcacgctcggaagcgaaagctgctatcgaacaatta
ggcgggtctgttacaggaagtgtcagcaaaaaaactgactatctgattgcaggcgttgat
gcaggttcaaagctcgataaggccgaggaacttggtattaccatttggagtgaagagcag
cttagagaagtcttaggtaattaa
DBGET
integrated database retrieval system
