Vibrio nigripulchritudo: VIBNI_A2621
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Entry
VIBNI_A2621 CDS
T02871
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vni
Vibrio nigripulchritudo
Pathway
vni03030
DNA replication
vni03410
Base excision repair
vni03420
Nucleotide excision repair
vni03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VIBNI_A2621 (ligA)
03410 Base excision repair
VIBNI_A2621 (ligA)
03420 Nucleotide excision repair
VIBNI_A2621 (ligA)
03430 Mismatch repair
VIBNI_A2621 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vni03032
]
VIBNI_A2621 (ligA)
03400 DNA repair and recombination proteins [BR:
vni03400
]
VIBNI_A2621 (ligA)
Enzymes [BR:
vni01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VIBNI_A2621 (ligA)
DNA replication proteins [BR:
vni03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VIBNI_A2621 (ligA)
DNA repair and recombination proteins [BR:
vni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VIBNI_A2621 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VIBNI_A2621 (ligA)
MMR (mismatch excision repair)
DNA ligase
VIBNI_A2621 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VIBNI_A2621 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
CCO58675
UniProt:
U4K0B1
LinkDB
All DBs
Position
1:complement(2787658..2789673)
Genome browser
AA seq
671 aa
AA seq
DB search
MSKNIEQQYAELKQTLHHHAVKYYVEDSPVIPDAEYDRLMRQLLEIEEQNPDWVTVDSPS
QRVGGPALDSFTSVAHEIPMLSLDNAFNDEEIEGFYRRATDRAPGTDIQTFSCEPKLDGL
AVSLLYENGVLVQAATRGDGATGENITENVRTINAIPLILQGEGWPTRIEVRGEVFMPKA
GFDKMNEEALKKGLKPFVNPRNAAAGSLRQLDSKITATRPLSFYAYSVGVVEGGELSDSH
YERFLQLKSWGLPMCPETKQVQGLKDVFEYYKDILEKRDSLPYEIDGVVIKIDDIAIQEQ
LGFVARAPRWAIAYKFPAQEEITVLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNASLH
NADEIERLGVKIGDSVIIRRAGDVIPQVTGVILERRPDNAGEIVYPTACPVCESDVERLE
GEAVTRCTGGLICQAQRKEALKHFVSRKALDVDGLGEKVIEQLVDREMVETPADLFKLSA
GVITVLDRMGPKSAQNVVDALNKSKQTTLPRFLYSLGIREVGEATAANLANHFKTLEAIQ
EASKEQLIEVNDVGEIVANHIKRFFEAESNLEVVAKLREFGVHWEDITQQSSDKPQLLEG
KTVVITGSFSKLNRNEAKAMLQELGAKVTGSVSKKTDILFAGEAAGSKLAKAQDLGVEVK
DEEALIEILGL
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagaacattgagcagcaatacgctgagttgaagcagaccctccatcatcacgcc
gtaaaatactatgtcgaagacagccctgtgattccggatgctgaatacgacaggttaatg
cgtcagcttttggaaatcgaagagcaaaaccctgattgggttacagtcgactccccaagc
cagcgcgttggaggacctgcacttgatagctttacgtcagtcgctcatgagattcccatg
ctctctctggataatgcattcaacgatgaagaaatagaaggattctatcgccgagcaaca
gatagagcgccaggaacagatattcaaacgttcagttgcgaacctaaacttgatgggctt
gcagttagccttctttatgaaaacggtgtgttagttcaggcggcaacccgaggagatggt
gccactggcgaaaacattaccgagaatgttaggacgataaacgctattcctctgattctg
cagggagaaggctggccaactcgcattgaggtgcgtggtgaggtctttatgcctaaggcg
ggcttcgacaagatgaacgaagaagcgcttaagaaaggtctgaagccttttgtaaacccg
cgaaatgcagcagcgggaagcctgcgtcaactggattcaaaaatcacggctacaagacca
ttgagcttttatgcgtacagcgtgggtgttgtagaaggtggcgaactgtctgatagtcac
tacgaacgatttctgcaactgaagtcgtggggtttacctatgtgcccagagacgaaacag
gtccaaggactaaaagacgtctttgagtactacaaggacattcttgagaaacgagatagc
ctgccgtatgaaatagacggcgtagtcataaaaattgatgacatcgctattcaggaacag
cttggcttcgttgcgagagcgccgcgttgggcgattgcgtataaattccctgcacaagaa
gaaattaccgttctgaatgacgtcgaattccaggttggtcgcaccggagccatcacgcct
gttgctaaacttgaaccagtatttgttggtggcgttaccgtcagcaatgcttctcttcac
aatgccgatgaaatcgaacgactaggtgtaaaaattggtgacagcgtcattattcgacgt
gctggtgatgtgattcctcaggtgacaggagtgattctggagagacgcccagataacgct
ggcgaaattgtatacccaacggcttgcccagtctgcgaatcagacgtagagcgactggaa
ggtgaagctgttacccgatgtacgggagggctaatttgtcaggctcagcgtaaagaagca
ctcaagcattttgtgtcccgaaaagcgctcgatgtagatgggctaggcgaaaaagtcata
gaacagctagtagaccgcgaaatggtggaaaccccagcagatcttttcaaactttcggct
ggagtcattaccgttttggatagaatgggacctaaatctgcacagaatgtggttgatgcg
ctaaataaatcaaaacagacaacgcttcctagatttctatactctcttggaattcgagaa
gttggtgaagcaacagcagcaaatttagcaaaccactttaaaacactggaagccatccaa
gaagcaagcaaagaacagttaattgaagttaatgatgttggtgaaatcgtcgcaaatcac
atcaaacgtttcttcgaggcagagagtaatcttgaggttgttgcaaaacttcgggaattt
ggtgtccattgggaagatatcacacaacaatccagtgataagccacagctactggaagga
aaaaccgttgttattactggcagcttctccaagctaaatcgaaatgaagctaaagctatg
ctgcaagaattgggagcgaaggtgacaggaagcgtgtctaagaaaacggatatcctattc
gctggcgaagctgcaggctctaagttagctaaagctcaagatctcggagtcgaagtcaaa
gatgaagaggctctaatagagatcttaggtttgtaa
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integrated database retrieval system
