Veillonella nakazawae: VEIT17_08340
Help
Entry
VEIT17_08340 CDS
T06972
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vnk
Veillonella nakazawae
Pathway
vnk03030
DNA replication
vnk03410
Base excision repair
vnk03420
Nucleotide excision repair
vnk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vnk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VEIT17_08340
03410 Base excision repair
VEIT17_08340
03420 Nucleotide excision repair
VEIT17_08340
03430 Mismatch repair
VEIT17_08340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vnk03032
]
VEIT17_08340
03400 DNA repair and recombination proteins [BR:
vnk03400
]
VEIT17_08340
Enzymes [BR:
vnk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VEIT17_08340
DNA replication proteins [BR:
vnk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VEIT17_08340
DNA repair and recombination proteins [BR:
vnk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VEIT17_08340
NER (nucleotide excision repair)
GGR (global genome repair) factors
VEIT17_08340
MMR (mismatch excision repair)
DNA ligase
VEIT17_08340
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VEIT17_08340
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH_3
HHH
Zn_ribbon_RlmA
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
BBU34388
UniProt:
A0ABM7HBJ7
LinkDB
All DBs
Position
953565..955568
Genome browser
AA seq
667 aa
AA seq
DB search
MNPKDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIVSSSPTQR
VGMKVEGSFEKVVHGRPMLSLSNVFSADEVRAFASRVEKELGHKPSAYVVELKIDGLAVN
LHYENGMFVRAVTRGDGRIGEDVTANVRTIKSIPLYLENAPEFIEVRGEAYMPHSEFKRI
NEERDEEGLPTFVNPRNAAAGSLRQQDPAITASRNLAFFAYAIGSEVGANIHSQEELLQS
LETFKFSVNPHYRVCKTIDEVIEAINYWGEKRHELPYDTDGMVIKVNGFDDQEVLGSTAK
DPKWATAYKYPPEEVETVLKDITINVGRTGVLTPTGELESVFVSGTNVSRVTLHNQDFIN
EKDIRIGDHVIIHKAAEIIPEVIRVVPEKRTGSEVPFTIPNRCPVCDSPAVRREGEAAVR
CTNKHCPAIEKEQIIHFASRDAMNIDGLGPSIVENLINNKLITNVVDLYHLTVDQLVTMD
RMGKKSAENLVKAIADSKTRGLDRVLYGLGIRLIGSKAAGTIANVVKSMERFMTITKEEL
VAVEEIGPTMADSIVEYRQDPAHVEIIEGLTAAGLKMTVDVVEAAGNQMEGEIVVLTGKL
EVMGRSEAGKILEAHGAKVTGSVSKKTTLVIAGEDSGSKLTKANELGIRVMNEEEFVELL
KELGELN
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgaaagatagaattaaagagttacaacaagagctaactcatgcgcagtattta
tactacgtaaaagatgctcctacaatgagtgactttgaatatgataaaaaatatcgtgag
cttgttgatttggaaaccgctcatcctgaatatattgtgtcatcttctccaacacaacgg
gtaggtatgaaggtggaaggttcctttgaaaaggtcgttcatggccgtcctatgttgagc
ttatctaatgtatttagtgctgatgaagtacgtgcatttgctagtcgtgtagagaaggaa
ttaggtcataagccttctgcttatgtggtagaacttaaaatcgatggtttagctgttaat
ttgcactatgagaacggcatgtttgtacgtgccgtaacacgtggtgatggtcgcattggt
gaagacgtaactgctaatgtgcgtactattaaatccattcctttatatctagagaatgcg
ccagaatttatcgaggttcgcggtgaagcgtatatgcctcatagcgaatttaaacgtata
aatgaagaacgtgacgaagagggcttgcctaccttcgtaaatcctcgtaatgcagcagcc
ggttctttgcgtcaacaagatcctgccattacggctagtcgtaatttagcattctttgcc
tatgcaatcggttctgaagtgggggctaatattcatagccaagaggaattgctacaaagt
ctagaaacgttcaagttttctgtaaatcctcattaccgcgtatgcaaaacaattgacgag
gtcatagaggctattaattattggggtgaaaagcgccatgagttgccatacgatacagat
ggtatggtaattaaggttaatggttttgatgaccaagaggtacttggcagtactgcgaag
gatcctaaatgggcaacagcgtacaaatatcctccagaagaggtagaaaccgttcttaag
gatattactatcaatgtaggacgtacaggtgttcttacgccaacaggcgagcttgaatcc
gtattcgtatctggtacgaatgtaagtcgtgtaacattacataatcaagactttatcaat
gaaaaggatattcgcattggtgaccacgttatcattcacaaggcggctgaaattattcca
gaagttatccgcgtagttccagaaaaacgtactggttctgaggtgcctttcaccattcca
aatcgctgtccagtatgtgactctccggcagttcgtcgtgaaggtgaagccgctgttcgt
tgtactaataaacactgtccagccattgaaaaagaacaaattatccattttgcatctcgc
gatgctatgaatatagatggccttggtcctagcattgtagaaaacttgattaataataag
ttaattactaatgtggtggatttatatcatttaacagtagatcaactagttaccatggat
cggatgggtaagaaatctgcagagaatttggtgaaagccatcgcagactctaaaactcgt
ggattagaccgcgtattgtatggcctcggtattcgcctaattggatctaaagcagccggc
acaattgctaacgttgtgaaatctatggaacgattcatgacaattactaaagaagaactc
gttgcagtagaagaaatcggtcctactatggctgatagtattgttgaataccgtcaagat
cctgctcatgtagagatcattgaaggtttaacagcggcaggacttaaaatgactgtagat
gttgttgaagcagcaggcaaccaaatggaaggtgaaattgtcgttctcacaggtaaactt
gaagttatggggcgcagtgaagctggtaagattcttgaagctcatggggctaaggttaca
ggttccgtatctaagaaaacaacccttgttattgctggcgaagacagtggtagtaagctt
actaaagcaaatgaattgggtattcgtgttatgaatgaagaagagtttgtagaactatta
aaagaattaggagaacttaattaa
DBGET
integrated database retrieval system
