Vibrio neocaledonicus: D3H41_00160
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Entry
D3H41_00160 CDS
T06228
Symbol
vmeD
Name
(GenBank) multidrug efflux RND transporter permease subunit VmeD
KO
K18138
multidrug efflux pump
Organism
vnl
Vibrio neocaledonicus
Pathway
vnl01501
beta-Lactam resistance
vnl01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
vnl00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
D3H41_00160 (vmeD)
01503 Cationic antimicrobial peptide (CAMP) resistance
D3H41_00160 (vmeD)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vnl02000
]
D3H41_00160 (vmeD)
01504 Antimicrobial resistance genes [BR:
vnl01504
]
D3H41_00160 (vmeD)
Transporters [BR:
vnl02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
D3H41_00160 (vmeD)
Antimicrobial resistance genes [BR:
vnl01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
D3H41_00160 (vmeD)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ACR_tran
SecD_SecF_C
Motif
Other DBs
NCBI-ProteinID:
QCO84609
LinkDB
All DBs
Position
1:complement(34582..37704)
Genome browser
AA seq
1040 aa
AA seq
DB search
MRFTDVFIKRPVLAVSISFLIALLGLQAVFKMQVREYPEMTNTVVTVTTSYYGASANLIQ
GFITQPLEQAVAQADNIDYMTSQSVLGKSTITVNMKLNTDPNAALADILAKTNSVRSQLP
KEAEDPTVTMSTGSTTAVLYIGFTSDELSSSQITDYLERVINPQLFTVNGVSKVDLYGGM
KYALRVWLDPAKMGALKLTATDVMSVLNANNYQSATGQATGEFVLYNGSADTQVSNVAEL
EALVVKTGEGDVIRLGDIAKVTLEKSHDVYRASANGQEAVVAAINAAPSANPINIAADVL
ELLPQLERNLPSNIKMNVMYDSTIAINESIHEVVKTILEAAVIVLVVITLFLGSFRAVII
PIVTIPLSLIGVAMVMQAMGFSWNLMTLLAMVLAIGLVVDDAIVVLENVDRHIKEGESPF
RAAIIGTREIAVPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIIALTL
SPMMCSKMLKANEKPSKFEQKVHHVLDGMTNRYASMLKAIMASRPVVIVFAIIVFASLPV
LFKFIPSELAPSEDKGVVVLIGTAPSNSNLDYIQNTMDDVNKILSDQPEVEYAQVFNGVP
DSNQAFGLATLKPWGEREASQAEIKQRVGGLVSSIPGMSIAAYEMPELPGAGSGLPVQFV
ITTPNNFESLFTVANDILSEVASSPMFVYSDLDLKYDSATMKIKIDKDKAGAYGVTMQDI
GITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMKNYYVRSVDGKAVPLGSLIT
IDVVAEPRSLPHFNQLNSATVGAVTGPGVSMGDAVNWFENIAQTKLPAGYNHDYMGESRQ
FVMEGSALYATFGLALAIIFLVLAIQFESLRDPIVIMVSVPLAICGALIALAWGTASMNI
YSQVGLITLVGLITKHGILICEVAKEEQLHNKLSRIDAVMEAAKVRLRPILMTTAAMIAG
LIPLMYATGAGAAQRFSIGIVIVAGLAIGTLFTLFVLPVIYSYLAEKHKPLPVFVEDKDL
EKLARVDEAKAAHRELADNR
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgcgctttacagatgtttttataaaacgtccagttttagcggtatcgatcagctttttg
attgcattgcttggtttgcaagcggtgttcaaaatgcaagttcgtgagtaccctgaaatg
acgaatacggtggtcaccgtgaccaccagttactacggtgcaagtgccaacttgatccaa
ggctttattactcagccattggagcaagcggtggcgcaagccgataatattgattacatg
acttcgcaatcggtactaggtaaatcaaccattactgtcaacatgaagttgaatactgac
ccgaatgcagcattggctgatatcttagcgaaaacgaactcagtacgttctcagcttcca
aaagaagccgaagatccaaccgtaaccatgtcgacaggttcgacaacggcggtactgtac
atcggctttacgagtgacgagttatcttcaagccagatcactgactaccttgagcgtgta
atcaacccgcagttgttcactgtaaacggtgtatccaaagttgacctgtatggtggtatg
aagtacgcactgcgcgtatggttagatcctgccaaaatgggcgctttgaagttgaccgct
acggatgtgatgagcgttcttaacgccaacaactaccaatctgcaaccggtcaagcgacg
ggtgagttcgtactttataacggtagcgcagatactcaggtatcaaacgttgctgaactt
gaagcattggtcgtgaaaactggtgaaggggatgtcatccgcctaggtgatatcgctaaa
gtaacgctggagaagagtcacgacgtttatcgcgcaagtgcaaacggtcaagaagccgtg
gttgcggcgatcaacgcagcaccaagcgctaacccaatcaacattgcagcagacgtactt
gaactgttgcctcagcttgagcgcaacctaccaagtaacatcaaaatgaacgtgatgtac
gactcaactatcgccatcaacgaatcgattcacgaagtagtgaaaacgattcttgaagca
gcggtcatcgtacttgtggttatcacactgttcctaggttcattccgcgcggtaatcatt
cctatcgtgaccattccactttcattgattggtgtggcaatggtgatgcaggcaatgggt
ttctcttggaacttgatgacgctactggcgatggtgcttgccatcggtctggtggtggat
gacgcgatcgttgtactagaaaacgttgaccgtcacatcaaagaaggggaatcgccattc
cgagctgcaattattggtacgcgtgaaattgcggttccagttatcgcgatgacattgacg
ctaggtgcagtgtacgcgccgatcgcattgatgggtggtatcaccggttcattgttcaaa
gagttcgctttgacactggcaggttcagtattcgtatccggcatcatcgctttaacactc
tcaccgatgatgtgttcaaagatgcttaaggcaaacgagaagccgagcaagtttgagcaa
aaagttcaccatgtacttgatggcatgactaatcgctacgcaagcatgttaaaagcaata
atggctagccgaccagtggtgatcgtgtttgcgataattgtattcgcaagtttaccagtc
ctattcaagtttattcctagcgagctcgctccatctgaagataaaggtgttgtagtactc
atagggaccgcaccatcaaattcgaatttggactacatccaaaacaccatggatgatgtg
aataagattctctctgatcaaccagaagtggaatacgctcaggtatttaacggtgtaccg
gattctaatcaagcgtttggtttagctacactcaaaccatggggcgaacgagaagcgagc
caagcagaaatcaaacagcgtgttggtgggcttgtttcgagcattccgggaatgtctatt
gctgcctacgaaatgccggagctaccaggtgctggttcaggccttcctgtacagttcgta
attacaacgccaaacaactttgaaagtttgtttaccgttgcaaatgacattctgtcggaa
gtagcaagcagtccaatgtttgtctattccgatctggatctgaaatatgattctgcaacg
atgaagatcaagatcgataaagacaaagcaggtgcctacggtgtgactatgcaagacatt
ggtatcaccctcagcaccatgatggcagatggttatgtaaaccgtatcgacctaaatggc
cgctcttatgaggtaattcctcaggttgagcgtaaatggcgtctaaacccagaatcgatg
aagaactactatgtacgctctgtggacggtaaagcggttccattaggtagtctgattacc
attgatgtggtggctgagcctcgctctttgccacacttcaaccagctaaactcagcaact
gtgggtgctgttacaggccctggtgtttcgatgggggatgcagttaattggtttgaaaat
attgcacaaaccaaactgcctgcagggtataaccatgattacatgggcgaatctcgtcag
tttgtaatggaaggtagtgccttgtatgcaaccttcggtcttgcacttgcgatcatcttc
ctcgttctggcgattcaatttgaatcactccgcgatcctattgtcatcatggtatctgta
cctctggcaatctgtggtgccttgatcgcattggcctggggtacagcctcgatgaacatc
tactcgcaggttggtttgatcacgctggtcggcctaataaccaagcacggtatcttaatc
tgtgaagttgccaaagaagagcagttacataataaactgtctcgtattgatgcggtgatg
gaagctgcgaaagtgcgtcttcgccctatcctaatgaccactgcagcgatgatcgcaggt
ttgatcccgctgatgtacgcaacaggtgcaggtgccgcgcaacgtttcagtatcggtatc
gtcatcgttgctggccttgcaatcggtacactgttcacactattcgtactacctgtgatt
tacagctacctagctgaaaaacacaaacctctgccagtatttgttgaagacaaagacttg
gagaagttagcgcgagttgacgaagcgaaagcagctcatcgtgaattagcagataacaga
taa
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