Vibrio neptunius: KW548_05780
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Entry
KW548_05780 CDS
T08906
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vnp
Vibrio neptunius
Pathway
vnp03030
DNA replication
vnp03410
Base excision repair
vnp03420
Nucleotide excision repair
vnp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vnp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KW548_05780 (ligA)
03410 Base excision repair
KW548_05780 (ligA)
03420 Nucleotide excision repair
KW548_05780 (ligA)
03430 Mismatch repair
KW548_05780 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vnp03032
]
KW548_05780 (ligA)
03400 DNA repair and recombination proteins [BR:
vnp03400
]
KW548_05780 (ligA)
Enzymes [BR:
vnp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KW548_05780 (ligA)
DNA replication proteins [BR:
vnp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KW548_05780 (ligA)
DNA repair and recombination proteins [BR:
vnp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KW548_05780 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KW548_05780 (ligA)
MMR (mismatch excision repair)
DNA ligase
KW548_05780 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KW548_05780 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QXX07514
LinkDB
All DBs
Position
1:1212951..1214960
Genome browser
AA seq
669 aa
AA seq
DB search
MSQEIQEKLNQLRETLHYHGVKYYVEDNPEIPDAEYDRLMRELLALETDNPELVTLDSPS
QRVGGQPLDGFQSVTHEIPMLSLDNAFDDGELESFHKRMSDRIPSADFKVFCCEPKLDGL
AVSLLYENGILVQAATRGDGATGENITENVRTIKSIPLKLSGQGWPQRIEVRGEVFMPKE
GFDKLNQQAQKKGEKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSVGVVEGTALSESH
YERFLQLKGWGLPMCPETRRVANLTEVKAYYQDILERREALPYEIDGVVIKVDDIGLQEQ
LGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLH
NADEIERLGVKVGDSVIIRRAGDVIPQIVSVIEERRPDNARDIVFPKQCPVCCSEVERIE
GEAVARCSGGLVCQAQRKEALRHFVSRKALDVDGLGEKVIEQLVDREMVETPADLFSLSA
GVITVLDRMGPKSAQNIVDALNKAKQTTLPRFLYSLGIREVGEATAANLAQHFKTLDAVQ
TANLEQLIEVSDIGDIVANHIIAFFAQDKNQQVIQSLLDQGIVWPEIEEPSGDIPQPLAG
KIVVLTGSLSQLSRNEAKAALQGLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIQ
TEQDLVNLI
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagagattcaagaaaagctcaatcagttgcgtgagaccctccattaccacggt
gttaagtattacgttgaagacaaccctgagatccctgatgctgaatatgatcgattaatg
cgtgagctattagcgctcgaaaccgacaaccctgagctggtcactttggattctccaagt
cagcgtgtaggtggacagccgcttgatgggttccaatctgtaacccatgagattccgatg
ttgtcattggacaatgcattcgatgatggcgagctagaaagcttccacaagcgtatgtct
gatcgcataccttctgccgatttcaaggttttctgctgcgagcctaaactggatggtctg
gctgtaagtttactgtatgagaatggtattttggttcaggcggcgactcgaggtgatggc
gctacgggagaaaatattactgagaatgtccgcaccatcaaatccattccgctcaaattg
agtggtcagggttggccgcaacgtatcgaggtacgtggtgaagtctttatgccaaaagaa
ggcttcgacaaattgaatcagcaagcccagaaaaagggcgagaaagtctttgtgaatcca
cgtaacgcagcagcaggcagtttacgtcaattggattcccgtattacagccacacgtcct
cttagtttctatgcatacagcgttggtgttgttgaaggaactgcattgtctgaaagccat
tatgagcgctttctgcaactgaaaggctgggggctaccaatgtgccctgaaactcgtcga
gttgctaatttgaccgaagtaaaagcttattatcaagatattttagagcgccgagaagct
ttaccctatgaaatcgatggggttgtgattaaagtcgacgatattggattacaagaacag
ttaggctttgttgctagagcaccacgatgggcgattgcttacaagtttcctgcgcaagaa
gagatcaccttgctgaatgatgttgagttccaagtcggaaggactggagcgattacacct
gtagccaaactggagccagtgtttgtcggcggtgtgacggtcagcaatgcaacattgcac
aatgcagatgagattgagcgccttggtgtgaaagtcggtgatagcgtcatcattcgccgt
gcaggagacgtgattccacaaatagtttctgtgattgaagagcgtcgaccagataatgct
cgcgatatcgtgtttccaaaacagtgtcctgtatgctgttcagaggtggaacgtattgaa
ggtgaagcggttgcgcgatgttctggtggcttagtttgtcaggcgcaacgtaaagaggca
ttgagacattttgtgtctcgtaaagctcttgatgtcgatgggcttggagagaaggtcatt
gaacagctagtggatcgagagatggttgaaacgccagcagatttattcagtttatccgct
ggggtgataactgtccttgatcgtatggggccgaaatcagcgcaaaatattgttgatgca
ttaaacaaagctaagcagacgacattgcctcgattcctctattcccttggtattcgagaa
gttggtgaagctacagcggccaatttagctcagcattttaaaactctagatgcagttcaa
actgccaatcttgaacaactcattgaagtctctgatattggcgatatcgttgccaatcat
atcatcgctttctttgctcaagataaaaaccaacaagttatccaaagtcttctcgaccaa
gggatagtatggcctgagattgaagaaccgagcggagacattccccaaccgctagcagga
aaaatagtggtgcttactgggtctttgtcacaactatctagaaatgaagccaaagccgca
ttgcaggggctaggcgctaaagtgacaggcagtgtgagcaagaaaacagacattttattt
gctggtgaaaatgcaggttctaaacttgctaaagctcaagaattaggtatcgaaatccaa
actgaacaggatttagttaatctaatctaa
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integrated database retrieval system
