Vogesella sp. XCS3: LCH97_10050
Help
Entry
LCH97_10050 CDS
T07617
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vox
Vogesella sp. XCS3
Pathway
vox03030
DNA replication
vox03410
Base excision repair
vox03420
Nucleotide excision repair
vox03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vox00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LCH97_10050 (ligA)
03410 Base excision repair
LCH97_10050 (ligA)
03420 Nucleotide excision repair
LCH97_10050 (ligA)
03430 Mismatch repair
LCH97_10050 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vox03032
]
LCH97_10050 (ligA)
03400 DNA repair and recombination proteins [BR:
vox03400
]
LCH97_10050 (ligA)
Enzymes [BR:
vox01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LCH97_10050 (ligA)
DNA replication proteins [BR:
vox03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LCH97_10050 (ligA)
DNA repair and recombination proteins [BR:
vox03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LCH97_10050 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LCH97_10050 (ligA)
MMR (mismatch excision repair)
DNA ligase
LCH97_10050 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LCH97_10050 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
UDM15666
LinkDB
All DBs
Position
complement(2117674..2120112)
Genome browser
AA seq
812 aa
AA seq
DB search
MTVIPAPVQTRATELVQLLERYNHQYYVLDAPTVPDAEYDRLFRELQQLEADYPALKTPA
SPTQRVGGEVLPAFDSVTHAVPMLSLSNAFSDMQADDFAVRHAELIAFDERVGRDLAAAN
LAYATEPKFDGLAISLLYRDGELVQAATRGDGSSGENVTANIRTVRAIPLRLHGEHVPSL
LEVRGEVLMLKRDFERLNETQRERGDKPFANPRNAAAGSLRQLDSRITAQRRLSFFAYAI
AQVDGADWPATHDAEMDWLAALGFPVVQADLRPVVHGAAGLAAYYESVLSRRAGLPFEID
GVVYKLNSRAQQNRLGFVSRAPRWAIAHKFPAEEALTVVEAIEEQVGRTGAITPVARLQP
VFVGGVTVTNATLHNEDEVRRKDVRVGDTVIVRRAGDVIPEVVAVVPDKRPMRPTLGGDL
FSSSEEPMYSAYRLPSQCPVCGSHVVREEGEAIARCSGGLVCKAQRTQAIQHFAGRRMMD
IDGLGERYIDKLVEFDYVRSVADLYRLTLADLLEMKRRADEQEGITPETVKAGKVATKWA
ENLIDAIAASKTPPLARWLFALGIRHVGESTAKTLADWLGSLAHIRQAPRAVLAALPDIG
GVVADAIAEFFAEAQNEAVIDALLAAGVAPADEHAPRAQLHDKLTTANLYARLGVPRLTE
VRAQQLAALQPDIAALAAMPRVDVIQLALPAEVVNALADWLDVAANRAALLQLAAYRDAV
LAATPVEEAASLNEAVAGKTFVLTGTLPTMGRDQAKALVEAAGGKVSGSVSKKTHYVVAG
AEAGSKLDKALELGVPVLDEAGLLALLGQDPA
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgactgtcatccctgcccctgtccagacccgcgccaccgagctggtgcagctgctggaa
cgctacaaccaccaatactacgtgctggacgcccccacggtgccagacgccgaatacgac
cgcctgttccgcgagctgcagcagctggaggccgactatccggcgctgaaaacccccgcc
tcgcccacgcagcgggtcggcggcgaggtactgccggctttcgatagcgtgacgcacgcg
gtgccgatgctgtcgctgtccaacgccttttccgacatgcaggccgatgatttcgccgtg
cgccacgccgagctgattgcctttgacgagcgggttggccgcgacctggcggcggccaac
ttggcctacgccaccgagcccaagttcgacggcctggccatcagcctgctgtaccgcgat
ggcgaactggtgcaggccgccacccgtggcgacggcagcagtggcgagaacgttaccgcc
aatatccgtaccgtgcgtgctatcccgctgcgtctgcatggcgagcatgtcccgtcgctg
ctggaggtgcgtggcgaggtgctgatgctcaagcgcgatttcgagcgcctgaacgagacc
cagcgcgaacgcggtgacaagccgtttgccaacccgcgcaacgctgccgccggcagcctg
cgccagctggactcccgcattaccgcgcagcgccggctgtcgttctttgcctacgccatt
gcccaggtagacggtgccgactggcctgccacgcacgatgccgaaatggactggctggct
gcgctgggcttcccggtagtccaggccgacttgcggccggtggtgcacggcgctgccggg
ctggccgcctactacgaaagcgtgctgtcgcgccgtgccggcctgccgttcgagatcgac
ggcgtggtgtacaagctgaacagccgtgcgcagcagaaccgcctgggcttcgtgtcgcgc
gcgccgcgctgggccatagcgcataaattccccgccgaagaggcgctgaccgtggtggaa
gccatcgaggaacaggttggccgcaccggcgccattaccccggtggcgcgcttgcagccg
gtgtttgtcggcggcgtcaccgtcaccaacgccacgctgcacaacgaggacgaagtgcgc
cgcaaggacgtgcgcgtgggtgataccgtcatcgtgcgccgcgctggcgacgtgatcccc
gaagtggtagccgtggtgccggacaagcgtccgatgcggccaaccctgggtggcgacctg
ttcagcagcagcgaagagccgatgtacagtgcctaccgcctgccaagccagtgcccggtg
tgtggcagccacgtggtgcgtgaagaaggcgaagccatcgcccgctgcagtggcgggctg
gtgtgcaaggcgcaacgcacgcaagccatccagcactttgccgggcgccgcatgatggac
atcgacggcctgggcgagcgctacatcgacaagctggtggagttcgactacgtgcgcagc
gtggccgacctgtaccggctaacgctggctgatttactggaaatgaagcgccgtgccgac
gagcaggaaggcatcacgccagaaacggtgaaggctggcaaagtggccaccaaatgggcc
gaaaatctgatcgacgccatcgccgccagcaaaacgccgccgctggcgcgctggctgttt
gcgctggggatccgtcatgtgggcgaatctaccgccaagacgctggccgactggctaggt
tcgctggcgcacatccgccaggcgccgcgcgcagtgctggcggcgctgccggatatcggc
ggcgtggtggccgacgccatcgccgaattctttgccgaggcgcagaacgaagcggtgatc
gacgccttgctggccgccggcgtagcccctgctgacgaacacgcgccgcgggcccagctg
cacgacaaactgactacggccaacctttatgcccgcctgggcgtgccgcggctgaccgag
gtgcgtgcgcagcaactagcggccttgcagcccgatatcgccgcgctggcggccatgccg
cgtgtggacgttatccagctggcgctgccggccgaggtggtgaacgcgctggccgactgg
ctggacgtggctgccaaccgtgccgcgctgctgcagttggcagcctaccgtgatgcagtg
ctggccgctacgccggtggaagaggcggccagcctgaacgaagcggtggccggcaaaact
tttgtgctgaccggtacgctgcctaccatggggcgcgaccaggccaaagcactggtggag
gccgctggtggcaaggtgagtggcagcgtgtccaagaaaacccactacgtggtggctggc
gccgaggctggcagcaagctcgataaagcgctggagctgggtgtgccggtgctggacgag
gcgggtttgctggcgctgctggggcaggatcctgcatga
DBGET
integrated database retrieval system
