Vibrio parahaemolyticus RIMD 2210633: VP0800
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Entry
VP0800 CDS
T00120
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vpa
Vibrio parahaemolyticus RIMD 2210633
Pathway
vpa03030
DNA replication
vpa03410
Base excision repair
vpa03420
Nucleotide excision repair
vpa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vpa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VP0800
03410 Base excision repair
VP0800
03420 Nucleotide excision repair
VP0800
03430 Mismatch repair
VP0800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpa03032
]
VP0800
03400 DNA repair and recombination proteins [BR:
vpa03400
]
VP0800
Enzymes [BR:
vpa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VP0800
DNA replication proteins [BR:
vpa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VP0800
DNA repair and recombination proteins [BR:
vpa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VP0800
NER (nucleotide excision repair)
GGR (global genome repair) factors
VP0800
MMR (mismatch excision repair)
DNA ligase
VP0800
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VP0800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
DNA_pol_lambd_f
DUF4874
DZR_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
BAC59063
UniProt:
Q87RJ4
LinkDB
All DBs
Position
1:833351..835363
Genome browser
AA seq
670 aa
AA seq
DB search
MSESVHQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTVDSPS
QRVGGKPLSEFSQVTHEVPMLSLDNAFDDSELDSFHKRAQDRIGGESIKQYCCEPKLDGL
AVSLLYENGILVQAATRGDGTTGENITENVRTINAIPLKLRGDDWPARLEVRGEVFMPKA
GFEKLNELARQKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGADLAASH
YERFLQIKSWGLPMCPETKRVDSLADVKTYYQHILQRRDALPYEIDGVVIKIDDIAVQER
LGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLH
NADEIERLQVKIGDQVVIRRAGDVIPQVVSVIKERRPETARDIIFPTQCPVCGSHVERIE
GEAVTRCTGGLVCQAQRKQALKHFVSRKALDVDGLGDKVIEQLVDREMVETPADLFKLSA
GVLTVLERMGPKSAQNIVNALEKSKLTTLPRFLYSLGIREVGEATAANLAQHFKSLEAIQ
AATEEQLIAVQDIGVVVAKHITTFFEEEQNQAVVQDLLVQGIHWPEVSAPEQGAELPLEG
KTVVLTGTLSQLGRTEAKEALQSLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIK
TEQDLLELIN
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaatcagtacatcaacggctagaagaactcaaagagtcgttgcactaccacgcc
gttcgctactacgtggaagataatccagagattccagatgcagaatacgatcgcctaatg
cgtgaactgctagaaattgaagctcaacatcctgatttagtgacggttgattcgccaagt
cagcgagtgggtggtaagccgctttctgaatttagtcaggtgacacacgaagtcccaatg
ttgtcattggataacgcattcgacgacagtgaactcgacagctttcataaacgtgctcaa
gaccgaatcggtggagaaagcattaagcagtattgttgtgaaccaaagctagatggctta
gccgtgagtctgttgtatgaaaacggtattttagttcaagcggcaacgcgtggtgatggt
actacgggtgaaaacatcactgaaaacgtgcgcaccattaatgccattcctctgaagctg
aggggtgatgactggccagctcgtcttgaggttcgtggtgaagtgtttatgccgaaagcg
ggctttgaaaagttgaatgagcttgcgcgtcagaagggcgaaaaagtatttgtgaaccct
cgcaatgcagcagcaggcagtttacgtcaattagattcgcgtattacggcttcgcgccca
ctgagcttctacgcatacagtgttggagttgtgcaaggggctgatttggcagccagtcac
tatgagcgttttctacagataaaatcttggggactgccaatgtgtccagagaccaagcga
gtcgacagtttggcagacgtaaaaacttattatcaacacattctgcaacgtcgtgatgca
ttaccttacgaaattgacggagtcgtgatcaaaattgacgatattgccgttcaagagcgc
ctgggttttgttgctcgcgctccacgttgggcgatcgcatacaaattcccggctcaagaa
gaaatcaccacattgaatgaagttgagttccaagttggccgaacgggagcgatcactccg
gttgctaagttagagccagtgtttgttggtggcgtgacggtgagtaacgcaacgctgcat
aatgcggatgaaattgagcgccttcaagtaaagattggtgatcaggtcgtgattcgtcgt
gctggcgatgtgattcctcaagtggtttctgtcatcaaagagcgtcgaccagaaacggcg
cgagatattattttcccaactcagtgtcctgtttgtggttcgcacgtagagcgtatcgaa
ggggaggcggtgactcgatgtactggcggtttggtctgtcaagctcaacgtaagcaagcg
ctcaagcacttcgtctcacgtaaagcgttggatgttgatggtttaggtgacaaagttatc
gagcaattggtcgatcgtgaaatggtagaaacacctgccgatctgttcaagctttcggct
ggcgtattaaccgtattggagcgcatggggccaaaatctgctcaaaacattgttaatgcg
ttagaaaaatcgaagttaacaaccttgccacgtttcttatactcgctaggtattcgagaa
gtgggcgaggcaacggcggcaaacctagctcaacactttaaatcactggaagcgattcaa
gctgcaacggaagaacaacttattgctgttcaagatattggtgtggtagttgcgaagcac
attacgactttctttgaagaagagcaaaaccaagctgttgttcaagatctccttgtgcaa
ggtatccactggccagaagttagtgcacctgagcaaggcgcagaactgccactagaaggt
aaaactgtcgtgctaacgggtacactatctcaacttggacgtactgaagcaaaagaggcg
ttgcaatctttgggtgcaaaagtaactggcagtgtttccaagaaaaccgatattttattt
gctggtgaaaatgcaggttctaagctcgctaaggcgcaagaattgggtatcgagataaaa
actgagcaagacttgcttgaattgataaattaa
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