Vicugna pacos (alpaca): 102539069 Help Entry 102539069         CDS       T08098                                  Symbol THBS1 Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism vpc  Vicugna pacos (alpaca) Pathway vpc04015   Rap1 signaling pathway vpc04115   p53 signaling pathway vpc04145   Phagosome vpc04148   Efferocytosis vpc04151   PI3K-Akt signaling pathway vpc04350   TGF-beta signaling pathway vpc04510   Focal adhesion vpc04512   ECM-receptor interaction vpc04820   Cytoskeleton in muscle cells vpc05144   Malaria vpc05165   Human papillomavirus infection vpc05205   Proteoglycans in cancer vpc05206   MicroRNAs in cancer vpc05219   Bladder cancer Brite KEGG Orthology (KO) [BR:vpc00001]  09130 Environmental Information Processing   09132 Signal transduction    04015 Rap1 signaling pathway     102539069 (THBS1)    04350 TGF-beta signaling pathway     102539069 (THBS1)    04151 PI3K-Akt signaling pathway     102539069 (THBS1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     102539069 (THBS1)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     102539069 (THBS1)    04148 Efferocytosis     102539069 (THBS1)   09143 Cell growth and death    04115 p53 signaling pathway     102539069 (THBS1)   09144 Cellular community - eukaryotes    04510 Focal adhesion     102539069 (THBS1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     102539069 (THBS1)  09160 Human Diseases   09161 Cancer: overview    05206 MicroRNAs in cancer     102539069 (THBS1)    05205 Proteoglycans in cancer     102539069 (THBS1)   09162 Cancer: specific types    05219 Bladder cancer     102539069 (THBS1)   09172 Infectious disease: viral    05165 Human papillomavirus infection     102539069 (THBS1)   09174 Infectious disease: parasitic    05144 Malaria     102539069 (THBS1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:vpc04131]     102539069 (THBS1)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:vpc00536]     102539069 (THBS1) Membrane trafficking [BR:vpc04131]  Endocytosis   Phagocytosis    Opsonins     102539069 (THBS1) Glycosaminoglycan binding proteins [BR:vpc00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    102539069 (THBS1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C EGF_3 cEGF EGF_CA TSP1_ADAMTS Laminin_G_3 Laminin_G_2 TSP1_CCN EGF Laminin_G_1 Motif Other DBs NCBI-GeneID:  102539069 NCBI-ProteinID:  XP_006201694 UniProt:  A0A6I9I4Q6 LinkDB All DBs Position Unknown AA seq 1170 aa AA seqDB search MGLAWGLSVLFLLQVCGSNRIPESGGDNSVFDIFELTGAARKGSGRRLVKGPDPSSPAFR IEDANLIPPVPDNKFQDLVDAVRAEKGFLLLASLRQMKKTRGTLLAVERKDHSGQVFSVV SNGKAGTLDLSLTVQGKQHVVSVEEALLATGQWKSITLFVQEDRAQLYIDCEKMENAELD VPIQSIFTRDLASIARLRIAKGGVNDNFQGVLQNVRFVFGTTPEDILRNKGCSSSTSVLL TLDNNVVNGSSPAIRTNYIGHKTKDLQAICGISCDELSSMVLELRGLRTIVTTLQDSIRK VTEENKELANELRRPPLCYHNGVQYRNNEEWTVDSCTECRCQNSVTICKKVSCPIMPCSN ATVPDGECCPRCWPSDSADDGWSPWSEWTSCSATCGNGIQQRGRSCDSLNNRCEGSSVQT RTCHIQECDKRFKQDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARE TKACQKDACPINGGWGPWSPWDICSVTCGGGVQKRSRLCNNPTPQFGGKDCVGDVTENQI CNKQECPIDGCLSNPCFAGAKCTSYPDGSWKCGACPPGYSGNGVQCKDVDECKEVPDACF NHNGEHRCENTDPGYNCLPCPPRFTGSQPYGRGVEHATANKQVCKPRNPCTDGTHDCNKN AKCNYLGHYSDPMYRCECKPGYAGNGIICGEDTDLDGWPNENLVCVANATYHCKKDNCPN LPNSGQEDYDKDGIGDACDDDDDNDKIPDDRDNCPFHYNPAQYDYDRDDVGDRCDNCPYN HNPDQADTDNNGEGDACAADIDGDGILNERDNCQYVYNVDQRDTDMDGVGDQCDNCPLEH NPDQLDSDSDRIGDTCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDACDHDDDN DGIPDDRDNCRLVPNPDQKDSDGDGRGDACKDDFDHDNVPDIDDICPENVDISETDFRRF QMIPLDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGYDEFNAVDFSGTFFINTERDD DYAGFVFGYQSSSRFYVVMWKQVTQSYWDTNPTRAQGYSGLSVKVVNSTTGPGEHLRNAL WHTGNTPGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKTGFIRVVMYEGKKIMADSGPIYD KTYAGGRLGLFVFSQEMVFFSDLKYECRDS NT seq 3513 nt NT seq  +upstreamnt  +downstreamnt atggggctggcctggggactcagcgtcctgttcctgttgcaagtgtgcggctccaaccgc attccagagtctgggggagacaacagcgtgtttgacatctttgaactcacgggggctgcc cgcaagggctctgggcgccgactggtgaagggtcctgacccttccagcccagctttccgc atcgaggatgccaacttgatcccccctgtgccagacaacaagttccaagacctagtggat gccgtgcgggcggagaaaggtttcctcctcctggcctccctgaggcaaatgaagaagacc cggggcacgctgctggccgtggagcgaaaggaccattctggccaggtcttcagcgtggtc tccaatggcaaggcgggcaccctggacctgagcctgactgtgcaggggaagcagcacgtg gtgtcagtagaagaagccctcttggcgaccggccagtggaagagcatcaccctgtttgtg caggaggacagggcccagctgtacatcgactgtgagaagatggagaatgctgagctggac gttcccatccaaagcatcttcaccagggacctggccagcattgctagactccgcatcgca aaaggaggtgtcaatgacaatttccagggggtgctgcagaatgtgaggtttgtctttgga accacaccggaagacatcctcaggaacaaaggctgctccagctctaccagtgtccttctc acccttgataacaatgtggtgaatggttccagccctgccatccgcaccaactacattggc cacaagacaaaggatctgcaagccatctgtggcatctcctgtgacgagctgtccagcatg gtcctggagctcaggggcctgcgcaccattgtgaccacactgcaggacagcatccgcaaa gtgactgaagagaacaaggagctggccaacgagctgaggaggcctcccctctgctaccac aacggagtccagtacaggaataatgaggagtggacggtggacagctgcactgagtgtcgc tgtcagaactcagttaccatctgcaaaaaagtgtcctgccccatcatgccctgctccaat gccaccgttcctgatggagaatgctgcccacggtgttggcccagcgactccgcggatgac ggttggtccccgtggtctgagtggacttcttgctctgcaacatgtggcaatggaatccag cagcgcggtcgctcctgtgacagcctcaacaacagatgcgagggctcctctgtgcagacg cggacctgccacattcaggagtgtgacaagagatttaaacaggatggcggctggagccac tggtccccgtggtcgtcttgttcggtaacatgtggtgatggtgtgatcacaaggatccgg ctctgcaactctcccagcccccagatgaacgggaagccatgtgagggcgaagctcgggag accaaagcctgccagaaggacgcctgccccatcaatggaggctggggaccctggtcaccg tgggacatctgttctgtcacttgtggtggaggggtgcagaaacgtagccggctctgcaac aaccccacaccccagtttggaggcaaggactgcgtaggcgatgtgaccgaaaaccagatc tgcaacaagcaggaatgtcccattgatggatgcctgtccaatccctgctttgccggtgcc aagtgtacgagctaccctgacggcagctggaaatgtggtgcttgtcccccaggctacagt ggaaatggcgtccagtgcaaagatgttgatgagtgcaaagaagtccccgatgcctgcttc aaccacaacggagagcacaggtgtgagaacacggacccgggctacaactgcctgccctgc ccaccgcgcttcactggctcacaaccctatggccggggcgtcgaacacgccactgccaac aaacaggtgtgcaagccccgcaacccctgcacggacgggacgcacgactgcaacaagaac gctaagtgcaactacctggggcactacagcgaccccatgtaccgctgcgagtgcaagcct ggctacgctggcaatggcatcatctgcggggaggacacagacttggatggctggcccaac gagaacctggtgtgcgtggccaatgcaacttaccactgtaaaaaggataattgccccaac cttcccaactcagggcaggaagactatgacaaggatggaattggcgatgcctgtgatgat gatgatgacaatgataaaatcccagatgacagggacaactgtccgttccattacaatcca gcccagtatgactatgacagagatgacgtgggagaccgctgtgacaactgcccctacaac cacaacccagaccaggcagacacagacaacaacggggaaggagacgcctgcgccgcggac attgatggggatggcatcctcaatgaacgggacaactgccaatacgtctacaatgtggac cagagagacactgacatggatggggttggagatcagtgtgacaactgccccctggaacac aatccagatcagcttgactcggactcggaccgcattggagacacctgtgacaacaatcag gatattgatgaagatggccaccagaacaacctggacaactgtccctacgtgcccaatgcc aaccaagccgatcacgacaaggatggcaagggcgatgcctgcgaccatgacgatgacaac gatggcattcctgatgacagagacaactgcaggcttgtgcccaaccctgaccagaaggat tctgatggcgatggtcgaggtgatgcttgcaaagatgattttgaccatgacaatgtgcca gacatcgatgacatctgccctgaaaacgttgacatcagtgagacagatttccgccgattc cagatgattcctctagatcccaaagggacatcccaaaatgaccctaactgggttgtacgt catcagggtaaagaactcgtccagactgtcaactgtgatcctggacttgctgtaggttat gatgagtttaacgctgtggacttcagtggcacctttttcatcaacaccgaaagggatgac gactatgccggatttgtgtttggctaccagtccagcagccgcttctacgttgtgatgtgg aagcaagtcacccagtcctactgggacaccaaccccacgagggctcagggatactcaggc ctttctgtgaaggttgtaaattctaccacggggcctggcgagcacctgcggaatgccctg tggcacacgggaaacacccctggccaggtgcgcactctgtggcacgaccctcgccacata ggctggaaagatttcactgcctacagatggcgtctcagccacaggccaaagacgggcttc attagagtggtgatgtatgaagggaagaaaatcatggctgactcaggacccatctatgac aaaacctatgctggcggtaggctagggttgttcgtcttctctcaagagatggtgttcttc tccgatctgaaatatgaatgcagagattcctaa

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