Vicugna pacos (alpaca): 102540938 Help Entry 102540938         CDS       T08098                                  Symbol TRAF6 Name (RefSeq) TNF receptor-associated factor 6   KO K03175   TNF receptor-associated factor 6 [EC:2.3.2.27] Organism vpc  Vicugna pacos (alpaca) Pathway vpc04010   MAPK signaling pathway vpc04064   NF-kappa B signaling pathway vpc04120   Ubiquitin mediated proteolysis vpc04140   Autophagy - animal vpc04144   Endocytosis vpc04380   Osteoclast differentiation vpc04620   Toll-like receptor signaling pathway vpc04621   NOD-like receptor signaling pathway vpc04622   RIG-I-like receptor signaling pathway vpc04657   IL-17 signaling pathway vpc04722   Neurotrophin signaling pathway vpc04936   Alcoholic liver disease vpc05132   Salmonella infection vpc05133   Pertussis vpc05135   Yersinia infection vpc05140   Leishmaniasis vpc05142   Chagas disease vpc05145   Toxoplasmosis vpc05152   Tuberculosis vpc05160   Hepatitis C vpc05161   Hepatitis B vpc05162   Measles vpc05168   Herpes simplex virus 1 infection vpc05169   Epstein-Barr virus infection vpc05170   Human immunodeficiency virus 1 infection vpc05171   Coronavirus disease - COVID-19 vpc05200   Pathways in cancer vpc05222   Small cell lung cancer vpc05235   PD-L1 expression and PD-1 checkpoint pathway in cancer vpc05417   Lipid and atherosclerosis Brite KEGG Orthology (KO) [BR:vpc00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     102540938 (TRAF6)  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     102540938 (TRAF6)    04064 NF-kappa B signaling pathway     102540938 (TRAF6)  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     102540938 (TRAF6)    04140 Autophagy - animal     102540938 (TRAF6)  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     102540938 (TRAF6)    04621 NOD-like receptor signaling pathway     102540938 (TRAF6)    04622 RIG-I-like receptor signaling pathway     102540938 (TRAF6)    04657 IL-17 signaling pathway     102540938 (TRAF6)   09156 Nervous system    04722 Neurotrophin signaling pathway     102540938 (TRAF6)   09158 Development and regeneration    04380 Osteoclast differentiation     102540938 (TRAF6)  09160 Human Diseases   09161 Cancer: overview    05200 Pathways in cancer     102540938 (TRAF6)    05235 PD-L1 expression and PD-1 checkpoint pathway in cancer     102540938 (TRAF6)   09162 Cancer: specific types    05222 Small cell lung cancer     102540938 (TRAF6)   09172 Infectious disease: viral    05170 Human immunodeficiency virus 1 infection     102540938 (TRAF6)    05161 Hepatitis B     102540938 (TRAF6)    05160 Hepatitis C     102540938 (TRAF6)    05171 Coronavirus disease - COVID-19     102540938 (TRAF6)    05162 Measles     102540938 (TRAF6)    05168 Herpes simplex virus 1 infection     102540938 (TRAF6)    05169 Epstein-Barr virus infection     102540938 (TRAF6)   09171 Infectious disease: bacterial    05132 Salmonella infection     102540938 (TRAF6)    05135 Yersinia infection     102540938 (TRAF6)    05133 Pertussis     102540938 (TRAF6)    05152 Tuberculosis     102540938 (TRAF6)   09174 Infectious disease: parasitic    05145 Toxoplasmosis     102540938 (TRAF6)    05140 Leishmaniasis     102540938 (TRAF6)    05142 Chagas disease     102540938 (TRAF6)   09166 Cardiovascular disease    05417 Lipid and atherosclerosis     102540938 (TRAF6)   09167 Endocrine and metabolic disease    04936 Alcoholic liver disease     102540938 (TRAF6)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:vpc04131]     102540938 (TRAF6)    04121 Ubiquitin system [BR:vpc04121]     102540938 (TRAF6) Enzymes [BR:vpc01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      102540938 (TRAF6) Membrane trafficking [BR:vpc04131]  Endocytosis   Clathrin-mediated endocytosis    Ubiquitin E3 ligases     102540938 (TRAF6) Ubiquitin system [BR:vpc04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     102540938 (TRAF6) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 zf-TRAF TRAF6_Z2 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_2 zf-C3HC4_3 zf-C3HC4_4 zf-TRAF_2 zf-RING_5 SlyX TRAF3_RING RING_XB3-XBAT31 U-box zf-RING_11 DUF16 DUF3450 DUF4455 Spc29 DUF7310 AAA_13 CENP-Q ATG16 Med21 GCP_N_terminal DUF948 FlxA DUF1664 Motif Other DBs NCBI-GeneID:  102540938 NCBI-ProteinID:  XP_006216917 UniProt:  A0A6J0B0J6 LinkDB All DBs Position 10 AA seq 542 aa AA seqDB search MSLLHCENSCGSSQSESDCCAAMAAGSCSAAAKEDSVSGTASTGNLSSSFMEEIQGYDVE FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP DNFAKREILSLTVKCPNEGCLHKMELRHLEDHQAHCEFALMNCPQCQCSFQKCQLNFHIL EECPRRQVSCVNCAVSMAYEDKEIHDQNCPLANVICEYCNTMLIREQIPNHYDLDCPTAP VPCTFSTFGCHEKMQRNHLARHLQENTQSHMRMLAQAVQKLSLAEAPVPPREMLPYESPF VSRVSSGCHSEVQNFQETIQQLEGRLVRQDHQIRELTAKMETQSMYVNELKRTIRTLEDK VAEIEAQQCNGIYIWKIGNFGMHLKSQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTA QRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPIRQNHEEIMDAKPELLAFQ RPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFDMGSLRREGFQPRSTDS GM NT seq 1629 nt NT seq  +upstreamnt  +downstreamnt atgagtctgctgcactgtgaaaacagctgtgggtccagccagtctgagagcgactgctgt gcagccatggcggccggctcctgcagtgctgcggccaaggaggacagtgtgagcggaacc gccagcaccgggaatctctccagctcttttatggaggagatccagggatatgacgtggaa tttgacccgcccctggaaagcaagtatgaatgccccatctgtttgatggcgttacgagaa gcagtgcaaacaccatgtggccacaggttctgcaaagcctgcatcatcaaatcaataagg gacgcaggtcacaaatgtccagtagacaatgaaatactgctggaaaatcaactgttccct gacaattttgcgaaacgagagattctttctctgacggtgaagtgtccaaatgaaggttgt ttgcacaagatggaactgaggcatcttgaggatcatcaagcacattgtgagtttgctctt atgaattgtccccagtgccagtgttccttccaaaaatgccaacttaattttcatattctc gaggagtgtccaaggagacaggtttcctgtgtaaactgtgctgtatcgatggcatatgaa gataaggagattcatgaccagaactgtcctttggcaaatgtcatctgtgaatactgcaat accatgctcatcagagaacagattcctaatcattatgatctagattgtcctacagcccca gttccatgcacattcagtacttttggttgccatgaaaagatgcagagaaatcacttggca cgccacttgcaggagaacactcagtcgcacatgagaatgttggcccaggctgttcagaaa ttaagccttgcagaagctcccgtacctccgcgtgaaatgcttccatatgagtctcccttt gtgtcccgggtttcctctgggtgtcactcggaggtccagaatttccaagaaactattcaa cagttagagggtcgccttgtaagacaagatcatcaaatccgggagctgactgcgaaaatg gaaacccagagcatgtatgtaaatgagctcaaacgaaccatccgaacccttgaggacaaa gttgctgaaatagaagcacagcagtgcaatgggatttacatctggaagattggcaacttt ggtatgcacttgaaatctcaagaagaggagaaacctgttgtcattcacagccctggattc tacaccggcaaacccgggtacaaactctgcatgcgcctgcacctgcagctgccaactgct cagcgctgtgccaactacatatccctctttgtccacacgatgcagggggagtatgacagc cacctcccttggcccttccaggggacgatacggctcacgattcttgatcagtccgaagct cctataaggcagaaccatgaagagatcatggatgccaaaccagagttgcttgccttccag agacccacaatcccacggaacccaaaaggttttggctatgtgactttcatgcatctggaa gccctgagacaaagaaccttcatcaaggatgacactttattagtacgctgtgaggtctct acccgcttcgacatgggtagtcttcggagggagggttttcagccacgaagcactgactcg gggatgtag

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