Variovorax paradoxus B4: VAPA_1c06810
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Entry
VAPA_1c06810 CDS
T02835
Name
(GenBank) putative efflux transporter, RND family, MFP subunit
KO
K03585
membrane fusion protein, multidrug efflux system
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd01501
beta-Lactam resistance
vpd01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
VAPA_1c06810
01503 Cationic antimicrobial peptide (CAMP) resistance
VAPA_1c06810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
vpd03036
]
VAPA_1c06810
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vpd02000
]
VAPA_1c06810
01504 Antimicrobial resistance genes [BR:
vpd01504
]
VAPA_1c06810
Chromosome and associated proteins [BR:
vpd03036
]
Prokaryotic type
Chromosome partitioning proteins
Divisome proteins
VAPA_1c06810
Transporters [BR:
vpd02000
]
Other transporters
Accessory factors involved in transport [TC:
8
]
VAPA_1c06810
Antimicrobial resistance genes [BR:
vpd01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
VAPA_1c06810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HlyD_D23
HlyD_3
Biotin_lipoyl_2
HTH_SUN2
Motif
Other DBs
NCBI-ProteinID:
AGU47811
UniProt:
T1X5T1
LinkDB
All DBs
Position
1:complement(746502..747689)
Genome browser
AA seq
395 aa
AA seq
DB search
MLQSAKHVVRPALRSGRRLVWVLATFTIIVLSIAFTVWSLREHHSPRPAAPTASALTVTE
VLARTTEWPTTLDAPGAIAPWQEAVVGSQTSGLRIAELHVGVGDVVRRGQLLARFDAAML
RADEAQLLAGLAQAESLAAQADANRERALQLKGSGGISEQEILQYVTQAATARAQVDSAR
AQLNSKRLQLRHADVIAPDDGEISARSATLGAVASSGQELFRLVRQSRLEWRGELTAGQI
AAVTLGQSVSLALPDGGTAQARIRQIAPLLDERSRLGVVYADIAPGSTARGGMYASGQIA
LTTSNALVVPASSVVIRDGRSFVFRFIGSEATRKVRAQAVTTGRRRGTEIEILQNLAQGD
HVVAQGAGLLNDGDTVRVASPSVTAPLAALTLNKG
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgctccagtccgcaaagcatgtcgtgcgccctgctttacgttcgggtcgacgtcttgta
tgggtccttgccacgttcacgatcatcgtgctgtccatcgcatttaccgtgtggagcctt
cgggaacaccattcgccgcgccctgcggcaccgaccgcctctgcattgacggtaacggaa
gttctcgcgcgcacaacggaatggcccaccacgttggatgcccccggcgcgattgcgcca
tggcaggaagctgtcgtcggctcccagacctcagggctgcggattgcagaactgcatgtc
ggcgtgggcgacgtcgtacgacgcggccaactcctcgcgcgcttcgatgccgccatgctg
cgcgcggatgaggcgcaactgctcgccggcctcgcgcaggccgagagtctcgccgcgcag
gccgatgcgaaccgcgaacgcgcccttcaactcaagggcagcggaggcatcagcgagcag
gagatccttcagtacgtcacgcaagccgcgactgcgcgagcgcaggtcgattcggctcgc
gcgcaattgaactccaaacgcctgcaactgcgccatgcagacgtcattgcccctgacgat
ggtgaaatcagcgcgcgctcggccaccttgggggcggtggcaagcagcgggcaggagctc
ttccggctggtgcggcaaagcaggctcgaatggcgcggcgagctcacggccgggcagatc
gcagccgtgaccttggggcagtcggtttcgctcgcgctacccgacggcggcaccgcccag
gcgcgcatccgtcagatcgcgcccctgctcgacgagcgttcgcggctcggcgttgtgtat
gcggacattgcccccggcagcaccgcacgcggcggcatgtacgccagcggtcagatcgca
ctgacgacgagcaatgcgttggtggttcctgcgtcgagtgtggtgatccgcgacggtcgc
agttttgtattccgattcattggatccgaggccacgcgcaaagtgcgtgcgcaggccgtg
acgaccggacgtcgacgtggcacggagatcgaaatcctgcaaaacctcgcgcaaggcgat
cacgtagtcgcgcagggtgccggcctgctcaacgatggcgataccgtgcgcgtcgccagt
ccatcagtcactgcaccgttggcggcgctgacattgaacaagggctga
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