Variovorax paradoxus B4: VAPA_1c09780
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Entry
VAPA_1c09780 CDS
T02835
Symbol
lpxC
Name
(GenBank) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC
KO
K02535
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:
3.5.1.108
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00540
Lipopolysaccharide biosynthesis
vpd01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
VAPA_1c09780 (lpxC)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
vpd01005
]
VAPA_1c09780 (lpxC)
Enzymes [BR:
vpd01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.108 UDP-3-O-acyl-N-acetylglucosamine deacetylase
VAPA_1c09780 (lpxC)
Lipopolysaccharide biosynthesis proteins [BR:
vpd01005
]
Lipid A
VAPA_1c09780 (lpxC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LpxC
Motif
Other DBs
NCBI-ProteinID:
AGU48098
UniProt:
T1X6C2
LinkDB
All DBs
Position
1:1080653..1081642
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AA seq
329 aa
AA seq
DB search
MSIAAIARGIGRHGRHAPKIVGVLQQRTLKSISRAVGVGLHSGQRVELTLRPAPVDTGIV
FRRVDLPEPVDIRMTAEAVTDTRLASTVSTGGAKVQTVEHLMSACAGLGIDNLYIDITAD
EVPILDGSASSFVFLLQSAGIELQKAPRRFIRVTRKVEVREGEGANEKWASLEPYHGYKL
SFEIDFDHRVVNSTGQRVEFDLGTDSYSRDIARARTFGFTKEVEYMRSKGLALGGGLDNA
IVMDDTKVLNAGGLRYDDEFVKHKILDAMGDLYIIGKPLLAAYTAFRSGHALNNKLLREL
LAHSDAYEVVTFEDEKRAPRGFGEVARAW
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgtctatcgctgccatagcgaggggaatagggcggcacggccgccacgcgcctaaaatc
gtcggcgtgctgcaacaacgaaccctcaagtcgatcagccgcgccgtgggcgtgggactc
cacagtggacaacgcgtggagctgacgctgcgccccgctccggtggacaccggcatcgtg
ttccggcgcgtcgacctgcccgagccggtcgacatccgcatgaccgccgaagcggtgacc
gacacgcgcctggcctccaccgtctcgaccggcggcgcgaaggtgcagacggtcgagcac
ctgatgtcggcctgcgcgggcctgggcatcgacaacctctacatcgacatcacggccgac
gaagtgccgatcctcgacgggtcggcctcgtccttcgtgttcctgctgcaaagcgcaggc
atcgagctgcagaaggcgccgcgccgcttcatccgcgtgacgcgcaaggtcgaggtgcgc
gagggcgagggcgccaacgagaagtgggccagcctggagccctatcacggctacaagctg
agcttcgagatcgacttcgaccaccgcgtggtcaattccaccggccagcgcgtggagttc
gacctcggcaccgattcctacagccgcgacatcgcacgcgcgcgcaccttcggcttcacc
aaggaagtggaatacatgcgcagcaagggcctggcgctcggcggcggtctcgacaacgcc
atcgtgatggacgacaccaaggtgctcaatgccgggggcctgcgctacgacgacgagttc
gtgaagcacaagatcctcgacgccatgggcgatctgtacatcatcggcaagccgctgctc
gcggcgtacaccgcattccgttcgggccacgcgctcaacaacaagctgctgcgcgaactg
ctggcccacagcgatgcctatgaggtcgtcaccttcgaagacgaaaagcgcgcaccgcgc
ggtttcggcgaagtggcgagggcctggtag
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